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Homo sapiens
52
Mus musculus
8
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external data for catalog
46
guide RNAs
10
barcodes
5
genome
2
elements
1
transcriptome
1
Assemblies
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GRCh38
47
GRCm39
2
mm10
1
Transcriptome Annotations
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GENCODE 43
1
GENCODE M32
1
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ID
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Description
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File Set Type
Lab
Samples
Status
Summary
Taxa
Transcriptome Annotations
UUID
/curated-sets/IGVFDS3190PUWD/
IGVFDS3190PUWD
igvf:10X_Multiome_ATAC_cell_barcode_inclusion_list_fileset
/awards/Community/
10X Multiome ATAC cell barcode inclusion list
barcodes
/labs/community/
released
barcodes
fd60d197-3dd4-49bb-9493-0d237ec82007
/curated-sets/IGVFDS0056MEON/
IGVFDS0056MEON
igvf:igvf_catalog_beta_v0.1_adastra_allele_specific_binding
GRCh38
/awards/Community/
ADASTRA allele-specific binding events
external data for catalog
/labs/community/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
f981e985-56b9-41ce-bfa1-ee00f7cdaee9
/curated-sets/IGVFDS5567DYYY/
IGVFDS5567DYYY
jesse-engreitz:guidedeisgn_CRUDO_TAPseq
GRCh38
/awards/HG011972/
guide RNAs
/labs/jesse-engreitz/
released
Homo sapiens GRCh38 guide RNAs
Homo sapiens
f43270c5-51c6-4e51-a7d8-82a15d89322c
/curated-sets/IGVFDS5898ZDNL/
IGVFDS5898ZDNL
igvf:igvf_catalog_beta_v0.1_ensembl_genes
GRCh38
/awards/Community/
ENSEMBL genes with NCBI alias mappings
external data for catalog
/labs/community/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
f327cbb3-d3c8-47b3-b3f1-aaf06603cf30
/curated-sets/IGVFDS8678JUTA/
IGVFDS8678JUTA
igvf:igvf_catalog_beta_v0.1_uniprot
GRCh38
/awards/Community/
Uniprot
external data for catalog
/labs/community/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
ee77b5f8-8db9-41f8-8d7f-6eda9bb219d9
/curated-sets/IGVFDS5645BMIY/
IGVFDS5645BMIY
igvf:igvf_catalog_beta_v0.1_mouse_encode_ccre
GRCm39, mm10
/awards/Community/
Mouse ENCODE cCRE
external data for catalog
/labs/community/
released
Mus musculus GRCm39 mm10 external data for catalog
Mus musculus
eb9bad34-9bb4-4ab2-b3c6-da3ab10b6228
/curated-sets/IGVFDS1193SOYF/
IGVFDS1193SOYF
igvf:igvf_catalog_beta_v0.1_orphanet
GRCh38
/awards/Community/
Orphanet disease genes collection
external data for catalog
/labs/community/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
e4190fda-a9d0-4991-af77-22ce809f24be
/curated-sets/IGVFDS0756KPYR/
IGVFDS0756KPYR
igvf:igvf_catalog_beta_v0.1_encode_v4_cell_type_agnostic_ccres
GRCh38
/awards/Community/
ENCODE v4 cell-type agnostic cCREs
external data for catalog
/labs/community/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
df98ec1d-4060-42c1-b015-e5ccaa93d466
/curated-sets/IGVFDS6983MMSZ/
IGVFDS6983MMSZ
jesse-engreitz:curated_NOS3_CRISPRi_FF
GRCh38
/awards/HG011972/
guide RNAs
/labs/jesse-engreitz/
released
Homo sapiens GRCh38 guide RNAs
Homo sapiens
df271843-8b4e-417b-827b-60baadc510f5
/curated-sets/IGVFDS8793NHEL/
IGVFDS8793NHEL
igvf:igvf_catalog_beta_v0.1_encode_mpra
GRCh38
/awards/Community/
MPRA tested regulatory elements
external data for catalog
/labs/community/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
db63a466-ff76-4688-ac06-7670178bf97f
/curated-sets/IGVFDS3257FDZW/
IGVFDS3257FDZW
igvf:igvf_catalog_beta_v0.1_go_annotations
GRCh38
/awards/Community/
GO annotations (GO term->gene links)
external data for catalog
/labs/community/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
d759ec85-f4b3-4242-92ea-7e83ebf9a111
/curated-sets/IGVFDS9088SLTK/
IGVFDS9088SLTK
igvf:igvf_catalog_beta_v0.1_orphanet_ontologies
GRCh38
/awards/Community/
ORPHANET ontologies
external data for catalog
/labs/community/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
d222dec3-d728-45ac-b145-25f7c50f1356
/curated-sets/IGVFDS1759WTEV/
IGVFDS1759WTEV
igvf:igvf_catalog_beta_v0.3_Y2AVE_project
GRCh38
/awards/Community/
Y2AVE variants
external data for catalog
/labs/community/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
d0982256-06a8-4839-9356-ddcc4ebf28aa
/curated-sets/IGVFDS0491JHHV/
IGVFDS0491JHHV
igvf:igvf_catalog_beta_v0.1_UKB-PPP_gwas_studies
GRCh38
/awards/Community/
UKB-PPP gwas studies
external data for catalog
/labs/community/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
c82d69ac-5c36-442b-a960-b411c76458de
/curated-sets/IGVFDS9934ZYJM/
IGVFDS9934ZYJM
igvf:igvf_catalog_beta_v0.1_gtex_eqtls
GRCh38
/awards/Community/
GTEx eQTLs
external data for catalog
/labs/community/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
c7e2176c-e10f-4d53-bb63-45e8778d17c2
/curated-sets/IGVFDS7295JLJQ/
IGVFDS7295JLJQ
igvf:igvf_catalog_beta_v0.1_mondo_ontologies
GRCh38
/awards/Community/
MONDO ontologies
external data for catalog
/labs/community/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
c2713f0d-c9c0-41be-8ce2-a36b9131b482
/curated-sets/IGVFDS6815UTNH/
IGVFDS6815UTNH
igvf:igvf_catalog_beta_v0.1_mouse_human_element
/awards/Community/
mouse-human element
external data for catalog
/labs/community/
released
Mus musculus external data for catalog
Mus musculus
c01e5490-235a-4a4c-b704-286175b43e58
/curated-sets/IGVFDS3738IOGO/
IGVFDS3738IOGO
igvf:igvf_catalog_beta_v0.1_protein_complex_EBI
/awards/Community/
protein complex from EBI complex portal
external data for catalog
/labs/community/
released
Homo sapiens external data for catalog
Homo sapiens
bf88eaa2-59c4-441d-be24-e797bb482ddf
/curated-sets/IGVFDS9568KBCA/
IGVFDS9568KBCA
jesse-engreitz:guidedesign_CRUDO_PILOT_CCND1
GRCh38
/awards/HG011972/
guide RNAs
/labs/jesse-engreitz/
released
Homo sapiens GRCh38 guide RNAs
Homo sapiens
befea694-8436-4588-8f53-7bbe5a748224
/curated-sets/IGVFDS3646GVXC/
IGVFDS3646GVXC
igvf:10X_Multiome_snRNA-seq_i5_and_i7_indices_fileset
/awards/Community/
10X Multiome snRNA-seq i5 and i7 indices
barcodes
/labs/community/
released
barcodes
be1720b4-b137-4ea6-9bb1-f10309898bb6
/curated-sets/IGVFDS9339IZIB/
IGVFDS9339IZIB
/awards/HG012077/
Barcode to tissue sample mapping
barcodes
/labs/ali-mortazavi/
/multiplexed-samples/IGVFSM1676SYRC/
,
/multiplexed-samples/IGVFSM1955RVUC/
,
/multiplexed-samples/IGVFSM8093RPKR/
,
/multiplexed-samples/IGVFSM9603DIDI/
,
/multiplexed-samples/IGVFSM6958ESMJ/
,
/multiplexed-samples/IGVFSM6546CQJB/
,
/multiplexed-samples/IGVFSM8722YQAW/
,
/multiplexed-samples/IGVFSM2294BOOU/
released
Mus musculus barcodes
Mus musculus
b96b4b5c-b190-4008-b9fe-9570fd1e5173
/curated-sets/IGVFDS4757VBVY/
IGVFDS4757VBVY
igvf:igvf_catalog_beta_v0.1_gvatdb_allele_specific_binding
GRCh38
/awards/Community/
GVATdb allele-specific TF binding calls
external data for catalog
/labs/community/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
b5c91525-6961-4757-b298-0f184e10c728
/curated-sets/IGVFDS4406RWDD/
IGVFDS4406RWDD
GRCh38
/awards/HG011966/
guide RNAs
/labs/jay-shendure/
released
Homo sapiens GRCh38 guide RNAs
Homo sapiens
b00bad52-70f4-44ac-bbf6-f19be8cbbb40
/curated-sets/IGVFDS2588RYXK/
IGVFDS2588RYXK
igvf:igvf_catalog_beta_v0.1_cl_ontologies
GRCh38
/awards/Community/
CL ontologies
external data for catalog
/labs/community/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
afdc50c6-eb5a-4d9d-9f5c-c969277bb5e2
/curated-sets/IGVFDS1845GNZG/
IGVFDS1845GNZG
igvf:igvf_catalog_beta_v0.1_reactome_pathways
/awards/Community/
pathways from reactome into catalog
external data for catalog
/labs/community/
released
Homo sapiens external data for catalog
Homo sapiens
ac337ccc-38e4-47c1-9a6d-cbb8b2795bf7