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Lab
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None
External Lab, Community
21
Lior Pachter, Caltech
3
Charles Gersbach, Duke
1
Award
All
None
mapping
3
functional characterization
1
Status
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None
released
25
Status
released
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25 Items
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25 items
ID
Lab
Status
Title
Version
/software-versions/kb-python-v0.28.2/
/labs/lior-pachter/
released
kb-python
v0.28.2
/software-versions/pairtools-v0.3.0/
/labs/community/
released
pairtools
v0.3.0
/software-versions/bamtools-v2.2.3/
/labs/community/
released
BamTools
v2.2.3
/software-versions/macs-v2.1.0/
/labs/community/
released
MACS
v2.1.0
/software-versions/samtools-v1.3.0/
/labs/community/
released
Samtools
v1.3.0
/software-versions/bowtie2-v2.3.5/
/labs/community/
released
Bowtie 2
v2.3.5
/software-versions/pairsqc-v0.2.3/
/labs/community/
released
pairsqc
v0.2.3
/software-versions/deseq2-v1.36.0/
/labs/community/
released
DESeq2
v1.36.0
/software-versions/pandas-v2.2.2/
/labs/community/
released
pandas
v2.2.2
/software-versions/fastqc-v0.11.9/
/labs/community/
released
FastQC
v0.11.9
/software-versions/anndata-v0.10.8/
/labs/community/
released
anndata
v0.10.8
/software-versions/bustools-v0.43.2/
/labs/lior-pachter/
released
Bustools
v0.43.2
/software-versions/deseq2-v1.40.0/
/labs/community/
released
DESeq2
v1.40.0
/software-versions/cellranger-v6.0.1/
/labs/community/
released
Cell Ranger
v6.0.1
/software-versions/scanpy-v1.10.2/
/labs/community/
released
Scanpy
v1.10.2
/software-versions/hicar-quantification-v1.0.0/
/labs/charles-gersbach/
released
Gersbach HiCAR quantification script
v1.0.0
/software-versions/star-v2.4.1/
/labs/community/
released
STAR
v2.4.1
/software-versions/numpy-v1.26.4/
/labs/community/
released
NumPy
v1.26.4
/software-versions/samtools-v1.3.1/
/labs/community/
released
Samtools
v1.3.1
/software-versions/bwa-v0.7.17/
/labs/community/
released
Burrows-Wheeler Alignment Tool
v0.7.17
/software-versions/harmonypy-v0.0.9/
/labs/community/
released
harmonypy
v0.0.9
/software-versions/cooler-v0.8.11/
/labs/community/
released
Cooler
v0.8.11
/software-versions/bowtie-v1.2.3/
/labs/community/
released
Bowtie
v1.2.3
/software-versions/kallisto-v0.50.1/
/labs/lior-pachter/
released
Kallisto
v0.50.1
/software-versions/cutadapt-v3.4.0/
/labs/community/
released
Cutadapt
v3.4.0