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Document Type

Characterization Method

Status
released
48 items
UCI/Caltech IGVF dataset pipeline report for ali-mortazavi:IGVF_B01_subpool_6
plate map
released
ffc29f91-a54b-4cd0-8aed-e1c841ac2a41
  • charles-gersbach:AIO-hUBC-dSaCas9-2xVP64-2A-Thy1_1-plasmid-map
AIO-hUBC-dSaCas9-2xVP64-2A-Thy1.1 Map
plasmid map
released
ee0564e2-3d03-4c94-bcb3-39d2bbd2d588
  • jay-shendure:scQers_vector_pdf
Plasmid map for scQers vector pdf format
plasmid map
released
e90669ea-1311-43b1-952b-fc863c7898a5
  • charles-gersbach:gene-counts-table-file-format-RNA
Gene counts table
file format specification
released
e74f7bee-7c62-4acb-b1f8-50160292c236
UCI/Caltech IGVF dataset pipeline report for ali-mortazavi:IGVF_B01_subpool_2
plate map
released
de85427c-cb62-494e-8213-ef82cd71bfb7
  • jesse-engreitz:Addgene_TRE-KRAB-dCas9-IRES-BFP
Addgene Plasmid Map TRE-KRAB-dCas9-IRES-BFP
plasmid map
released
d8ce793f-933b-45ea-9611-1c3f80cb7e11
  • charles-gersbach:gene-counts-table-file-format-ATAC
Gene counts table
file format specification
released
d604ae54-e814-4a59-8523-eb2deb7f7841
Generation of HCT116-RAD21-mAID-mClover
experimental protocol
released
d2f1ed4f-d62a-471b-9e76-d5d8c77b072e
  • charles-gersbach:seurat-find-markers-mast-file-format
seurat FindMarkers mast results
file format specification
released
d298419c-50d3-43fc-97c0-e676fe182a27
  • charles-gersbach:hUBC-eGFP-BATF3-plasmid-map
hUBC 2A eGFP BATF3 Map
plasmid map
released
d25518aa-6bcb-43ce-a2f0-8d16f513ff0a
  • charles-gersbach:genomically-labeled-arrays-mcool
Contact matrix mcool files
file format specification
released
cb4a6813-68a9-4aff-af23-7d78a04dfc58
  • charles-gersbach:gene-counts-table-file-format
Gene counts table
file format specification
released
c79b81ec-d6e9-41e1-9417-519552cb64ce
UCI/Caltech IGVF dataset pipeline report for ali-mortazavi:IGVF_B01_subpool_7
plate map
released
c36e57a7-52c1-4dd1-a88b-c25655b3f216
  • charles-gersbach:deseq2-results-file-format-HiCAR
DESeq2 results
file format specification
released
ba2ff6df-4a86-462f-9323-bd3db83dacc8
  • charles-gersbach:WTC11-cardiomycetes-differentiation-protocol
WTC and Cardiomyocytes differentiation Protocol
cell fate change protocol
released
b705a1b0-8936-464e-84e1-c4d2b3df7711
Generation of inducible CRISPRi line
plasmid map
released
b0663905-6249-42ea-9937-9b2f645c787d
  • jay-shendure:NeuronDifferentiationProtocol
method for differentiating neurons from iPSCs
cell fate change protocol
released
a9ab6aae-48a0-444a-a609-3addf65d3027
  • charles-gersbach:deseq2-results-file-format-RNA
DESeq2 results
file format specification
released
a757cee1-35cd-429f-81da-fc123c7f983f
  • charles-gersbach:counts-in-peaks-table-atac-seq-file-format
ATAC-seq counts in peaks table
file format specification
released
a6030aeb-ca7d-4d08-9d55-d459b32b441c
Generation of inducible CRISPRi line
plasmid map
released
a1a19741-90cc-46ea-b90c-96c4a4b70d8e
  • jesse-engreitz:document_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_plasmid_sequence
sgOpti-blast gRNA plasmid sequence
plasmid map
released
a1610beb-0637-4d13-b2ef-def0c3afaca2
UCI/Caltech IGVF dataset pipeline report for ali-mortazavi:IGVF_B01_subpool_3
plate map
released
98e6116c-c0ab-463d-83db-7647711b131f
  • charles-gersbach:gRNA-counts-table-file-format
gRNA counts table
file format specification
released
7f185ed1-f80f-470c-9a5f-50fdd114d9a6
  • charles-gersbach:genomically-labeled-arrays-cool
Contact matrix cool files
file format specification
released
7d988f2a-6b4b-4e7c-800c-834170c9f7dc
UCI/Caltech IGVF dataset pipeline report for ali-mortazavi:IGVF_B01_subpool_4
plate map
released
7c9b9828-5097-48cc-942c-e000579e7de4