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File Set Type

Assemblies

Transcriptome Annotations

Taxa

Status
released
75 items
IGVFDS3190PUWD
  • igvf:10X_Multiome_ATAC_cell_barcode_inclusion_list_fileset
10X Multiome ATAC cell barcode inclusion list
barcodes
released
barcodes
fd60d197-3dd4-49bb-9493-0d237ec82007
IGVFDS0056MEON
  • igvf:igvf_catalog_beta_v0.1_adastra_allele_specific_binding
GRCh38
ADASTRA allele-specific binding events
external data for catalog
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
f981e985-56b9-41ce-bfa1-ee00f7cdaee9
IGVFDS5567DYYY
  • jesse-engreitz:guidedeisgn_CRUDO_TAPseq
GRCh38
guide RNAs
released
Homo sapiens GRCh38 guide RNAs
Homo sapiens
f43270c5-51c6-4e51-a7d8-82a15d89322c
IGVFDS5898ZDNL
  • igvf:igvf_catalog_beta_v0.1_ensembl_genes
GRCh38
ENSEMBL genes with NCBI alias mappings
external data for catalog
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
f327cbb3-d3c8-47b3-b3f1-aaf06603cf30
IGVFDS8678JUTA
  • igvf:igvf_catalog_beta_v0.1_uniprot
GRCh38
Human Uniprot proteins
external data for catalog
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
ee77b5f8-8db9-41f8-8d7f-6eda9bb219d9
IGVFDS5645BMIY
  • igvf:igvf_catalog_beta_v0.1_mouse_encode_ccre
GRCm39, mm10
Mouse ENCODE cCRE
external data for catalog
released
Mus musculus GRCm39 mm10 external data for catalog
Mus musculus
eb9bad34-9bb4-4ab2-b3c6-da3ab10b6228
IGVFDS1193SOYF
  • igvf:igvf_catalog_beta_v0.1_orphanet
GRCh38
Orphanet disease genes collection
external data for catalog
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
e4190fda-a9d0-4991-af77-22ce809f24be
IGVFDS0756KPYR
  • igvf:igvf_catalog_beta_v0.1_encode_v4_cell_type_agnostic_ccres
GRCh38
ENCODE v4 cell-type agnostic cCREs
external data for catalog
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
df98ec1d-4060-42c1-b015-e5ccaa93d466
IGVFDS6983MMSZ
  • jesse-engreitz:curated_NOS3_CRISPRi_FF
GRCh38
guide RNAs
released
Homo sapiens GRCh38 guide RNAs
Homo sapiens
df271843-8b4e-417b-827b-60baadc510f5
IGVFDS8793NHEL
  • igvf:igvf_catalog_beta_v0.1_encode_mpra
GRCh38
MPRA tested regulatory elements
external data for catalog
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
db63a466-ff76-4688-ac06-7670178bf97f
IGVFDS3257FDZW
  • igvf:igvf_catalog_beta_v0.1_go_annotations
GRCh38
GO annotations (GO term->gene links)
external data for catalog
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
d759ec85-f4b3-4242-92ea-7e83ebf9a111
IGVFDS9088SLTK
  • igvf:igvf_catalog_beta_v0.1_orphanet_ontologies
GRCh38
ORPHANET ontologies
external data for catalog
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
d222dec3-d728-45ac-b145-25f7c50f1356
IGVFDS1759WTEV
  • igvf:igvf_catalog_beta_v0.3_Y2AVE_project
GRCh38
Y2AVE variants
external data for catalog
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
d0982256-06a8-4839-9356-ddcc4ebf28aa
IGVFDS9885PKLH
  • igvf:igvf_catalog_mouse_variants_and_strains
GRCm39
mouse variants and strains
external data for catalog
released
Mus musculus GRCm39 external data for catalog
Mus musculus
d0346fe3-38c5-4a2c-875d-3e9cd8d2b12d
IGVFDS0491JHHV
  • igvf:igvf_catalog_beta_v0.1_UKB-PPP_gwas_studies
GRCh38
UKB-PPP gwas studies
external data for catalog
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
c82d69ac-5c36-442b-a960-b411c76458de
IGVFDS9934ZYJM
  • igvf:igvf_catalog_beta_v0.1_gtex_eqtls
GRCh38
GTEx eQTLs
external data for catalog
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
c7e2176c-e10f-4d53-bb63-45e8778d17c2
IGVFDS7295JLJQ
  • igvf:igvf_catalog_beta_v0.1_mondo_ontologies
GRCh38
MONDO ontologies
external data for catalog
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
c2713f0d-c9c0-41be-8ce2-a36b9131b482
IGVFDS6815UTNH
  • igvf:igvf_catalog_beta_v0.1_mouse_human_element
mouse-human element
external data for catalog
released
Mus musculus external data for catalog
Mus musculus
c01e5490-235a-4a4c-b704-286175b43e58
IGVFDS3738IOGO
  • igvf:igvf_catalog_beta_v0.1_protein_complex_EBI
protein complex from EBI complex portal
external data for catalog
released
Homo sapiens external data for catalog
Homo sapiens
bf88eaa2-59c4-441d-be24-e797bb482ddf
IGVFDS9568KBCA
  • jesse-engreitz:guidedesign_CRUDO_PILOT_CCND1
GRCh38
guide RNAs
released
Homo sapiens GRCh38 guide RNAs
Homo sapiens
befea694-8436-4588-8f53-7bbe5a748224
IGVFDS3646GVXC
  • igvf:10X_Multiome_snRNA-seq_i5_and_i7_indices_fileset
10X Multiome snRNA-seq i5 and i7 indices
barcodes
released
barcodes
be1720b4-b137-4ea6-9bb1-f10309898bb6
IGVFDS9339IZIB
Barcode to tissue sample mapping
barcodes
released
Mus musculus barcodes
Mus musculus
b96b4b5c-b190-4008-b9fe-9570fd1e5173
IGVFDS4757VBVY
  • igvf:igvf_catalog_beta_v0.1_gvatdb_allele_specific_binding
GRCh38
GVATdb allele-specific TF binding calls
external data for catalog
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
b5c91525-6961-4757-b298-0f184e10c728
IGVFDS4406RWDD
GRCh38
guide RNAs
released
Homo sapiens GRCh38 guide RNAs
Homo sapiens
b00bad52-70f4-44ac-bbf6-f19be8cbbb40
IGVFDS2588RYXK
  • igvf:igvf_catalog_beta_v0.1_cl_ontologies
GRCh38
CL ontologies
external data for catalog
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
afdc50c6-eb5a-4d9d-9f5c-c969277bb5e2