IGVF

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File Set Type

experimental data
2
intermediate analysis
2
principal analysis
2

samples.@id

/primary-cells/IGVFSM8821YQXI/

6 items

/analysis-sets/IGVFDS9202ZPBI/

IGVFDS9202ZPBI

charles-gersbach:cd8-tcells-intermediate-set-atac-seq-chronic-activation-batf3

/awards/HG012053/

/human-donors/IGVFDO1522NSLA/, /human-donors/IGVFDO9588OERW/

intermediate analysis

/measurement-sets/IGVFDS0986HRDF/, /measurement-sets/IGVFDS5328ZNKL/

/labs/charles-gersbach/

https://www.protocols.io/view/atac-seq-primary-human-t-cells-overexpressing-batf-c5pfy5jn

CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library

/primary-cells/IGVFSM8821YQXI/, /primary-cells/IGVFSM7232YAVV/

released

ATAC-seq: alignments

Homo sapiens

fdbe1d71-d4b0-4025-a01e-46b963a45785

/analysis-sets/IGVFDS6344XBAV/

IGVFDS6344XBAV

charles-gersbach:cd8-tcells-analysis-set-atac-seq-chronic-activation-batf3

/awards/HG012053/

/human-donors/IGVFDO1522NSLA/, /human-donors/IGVFDO9588OERW/

principal analysis

/analysis-sets/IGVFDS9202ZPBI/, /analysis-sets/IGVFDS3609QWUZ/

/labs/charles-gersbach/

CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library

/primary-cells/IGVFSM3805WZUU/, /primary-cells/IGVFSM6508DFUL/, /primary-cells/IGVFSM8821YQXI/, /primary-cells/IGVFSM7232YAVV/

released

ATAC-seq: fold change over control, peak quantifications

Homo sapiens

fcdc0263-c1e7-4ba0-87ba-5bcbfef7461c

/analysis-sets/IGVFDS5066GYDY/

IGVFDS5066GYDY

charles-gersbach:cd8-tcells-intermediate-analysis-rna-seq-batf3-overexpression-batf3

/awards/HG012053/

/human-donors/IGVFDO8289ZMDD/, /human-donors/IGVFDO9588OERW/, /human-donors/IGVFDO1522NSLA/

intermediate analysis

/measurement-sets/IGVFDS0965VVJT/, /measurement-sets/IGVFDS9825YLAW/, /measurement-sets/IGVFDS1336JNHX/

/labs/charles-gersbach/

https://www.protocols.io/view/rnaseq-of-primary-human-t-cells-overexpressing-bat-c5pdy5i6

CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library

/primary-cells/IGVFSM0218YCAH/, /primary-cells/IGVFSM8821YQXI/, /primary-cells/IGVFSM7232YAVV/

released

RNA-seq: transcriptome alignments

Homo sapiens

aeec9151-d161-46f5-99b9-7d53666a02e4

/measurement-sets/IGVFDS0986HRDF/

IGVFDS0986HRDF

charles-gersbach:cd8-tcells-atac-seq-chronic-activation-batf3-rep1

/assay-terms/OBI_0003089/

/awards/HG012053/

/human-donors/IGVFDO9588OERW/

experimental data

/labs/charles-gersbach/

ATAC-seq

https://www.protocols.io/view/atac-seq-primary-human-t-cells-overexpressing-batf-c5pfy5jn

/primary-cells/IGVFSM8821YQXI/

released

ATAC-seq integrating an expression vector library of BATF3

Homo sapiens

4ddb4705-c33c-4af8-b7d1-f3d6fc79313b

/measurement-sets/IGVFDS0965VVJT/

IGVFDS0965VVJT

charles-gersbach:cd8-tcells-rna-seq-chronic-activation-batf3-rep1

/assay-terms/OBI_0003090/

/awards/HG012053/

/human-donors/IGVFDO9588OERW/

experimental data

/labs/charles-gersbach/

RNA-seq

https://www.protocols.io/view/rnaseq-of-primary-human-t-cells-overexpressing-bat-c5pdy5i6

/primary-cells/IGVFSM8821YQXI/

released

RNA-seq integrating an expression vector library of BATF3

Homo sapiens

39de6306-b6b9-4cb2-a849-bb6ee1fde5ee

/analysis-sets/IGVFDS4582MPNU/

IGVFDS4582MPNU

charles-gersbach:cd8-tcells-analysis-set-rna-seq-batf3-overexpression

/awards/HG012053/

/human-donors/IGVFDO8289ZMDD/, /human-donors/IGVFDO9588OERW/, /human-donors/IGVFDO1522NSLA/

principal analysis

/analysis-sets/IGVFDS5066GYDY/, /analysis-sets/IGVFDS3105CGSW/

/labs/charles-gersbach/

CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library

/primary-cells/IGVFSM0218YCAH/, /primary-cells/IGVFSM7232YAVV/, /primary-cells/IGVFSM3805WZUU/, /primary-cells/IGVFSM6508DFUL/, /primary-cells/IGVFSM8821YQXI/, /primary-cells/IGVFSM4633QTQY/

released

RNA-seq: fold change over control, transcript quantifications

Homo sapiens

25476ba5-abdf-49e7-8a37-14a48fa7c22f