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experimental data
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gRNA sequencing
1
guide RNAs
1
intermediate analysis
1
principal analysis
1
samples.@id
/primary-cells/IGVFSM6223YCQV/
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Functional Assay Mechanisms
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Sample Summary
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Taxa
Taxa
Transcriptome Annotations
UUID
/measurement-sets/IGVFDS1675WFHV/
IGVFDS1675WFHV
charles-gersbach:cd8-tcells-perturb-seq-crispra-gex-rep2
/assay-terms/OBI_0003660/
/awards/HG012053/
/human-donors/IGVFDO6082RNLT/
experimental data
/labs/charles-gersbach/
Perturb-seq
https://www.protocols.io/view/perturb-seq-characterizing-regulators-of-t-cell-fu-c5s9y6h6
,
https://www.protocols.io/view/crispra-tiling-screens-c5rfy53n
/primary-cells/IGVFSM6223YCQV/
released
CRISPR activation Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
Homo sapiens
cdfa906a-3c29-4d32-99d0-718d4f1a8314
/auxiliary-sets/IGVFDS0993OMZM/
IGVFDS0993OMZM
charles-gersbach:cd8-tcells-perturb-seq-crispra-grna-rep2
/awards/HG012053/
/human-donors/IGVFDO6082RNLT/
gRNA sequencing
/labs/charles-gersbach/
/measurement-sets/IGVFDS1675WFHV/
/primary-cells/IGVFSM6223YCQV/
released
gRNA sequencing for CRISPR activation Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
Homo sapiens
c1bde51c-4dd9-4248-b2d8-d8d83fc5e2ea
/analysis-sets/IGVFDS4011VZXE/
IGVFDS4011VZXE
charles-gersbach:cd8-tcells-intermediate-analysis-set-perturb-seq-crispra
/awards/HG012053/
/human-donors/IGVFDO7605NZFO/
,
/human-donors/IGVFDO4425KRAT/
,
/human-donors/IGVFDO6082RNLT/
intermediate analysis
/measurement-sets/IGVFDS6764PIJI/
,
/measurement-sets/IGVFDS1675WFHV/
,
/measurement-sets/IGVFDS0238VKNF/
,
/auxiliary-sets/IGVFDS9108NLTS/
,
/auxiliary-sets/IGVFDS0993OMZM/
,
/auxiliary-sets/IGVFDS3945FAEL/
/labs/charles-gersbach/
https://www.protocols.io/view/crispra-tiling-screens-c5rfy53n
,
https://www.protocols.io/view/perturb-seq-characterizing-regulators-of-t-cell-fu-c5s9y6h6
CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
/primary-cells/IGVFSM6223YCQV/
,
/primary-cells/IGVFSM2105CLXS/
,
/primary-cells/IGVFSM8036VPRU/
released
activation Perturb-seq: filtered feature barcode matrix
Homo sapiens
b7d27188-86fc-4964-a36f-ac734749c151
/analysis-sets/IGVFDS5239SBBT/
IGVFDS5239SBBT
charles-gersbach:cd8-tcells-analysis-set-perturb-seq-crispra
/awards/HG012053/
/human-donors/IGVFDO7605NZFO/
,
/human-donors/IGVFDO4425KRAT/
,
/human-donors/IGVFDO6082RNLT/
principal analysis
/analysis-sets/IGVFDS4011VZXE/
/labs/charles-gersbach/
CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
/primary-cells/IGVFSM6223YCQV/
,
/primary-cells/IGVFSM2105CLXS/
,
/primary-cells/IGVFSM8036VPRU/
released
activation Perturb-seq: differential gene expression quantifications
Homo sapiens
a5f775f7-1681-4552-b045-6d06acb8a4ee
/curated-sets/IGVFDS4729GLXH/
IGVFDS4729GLXH
charles-gersbach:cd8-tcells-perturb-seq-grnas-set
GRCh38
/awards/HG012053/
guide RNAs
/labs/charles-gersbach/
/primary-cells/IGVFSM8036VPRU/
,
/primary-cells/IGVFSM6223YCQV/
,
/primary-cells/IGVFSM2105CLXS/
,
/primary-cells/IGVFSM3795JDHP/
,
/primary-cells/IGVFSM2747RJFY/
,
/primary-cells/IGVFSM5189UBOI/
released
Homo sapiens GRCh38 guide RNAs
Homo sapiens
2d8ec354-8116-4b47-b49c-a911d999e242