IGVF

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File Set Type

experimental data
2
intermediate analysis
2
principal analysis
2

samples.@id

/primary-cells/IGVFSM3805WZUU/

6 items

/analysis-sets/IGVFDS6344XBAV/

IGVFDS6344XBAV

charles-gersbach:cd8-tcells-analysis-set-atac-seq-chronic-activation-batf3

/awards/HG012053/

/human-donors/IGVFDO1522NSLA/, /human-donors/IGVFDO9588OERW/

principal analysis

/analysis-sets/IGVFDS9202ZPBI/, /analysis-sets/IGVFDS3609QWUZ/

/labs/charles-gersbach/

CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library

/primary-cells/IGVFSM3805WZUU/, /primary-cells/IGVFSM6508DFUL/, /primary-cells/IGVFSM8821YQXI/, /primary-cells/IGVFSM7232YAVV/

released

ATAC-seq: fold change over control, peak quantifications

Homo sapiens

fcdc0263-c1e7-4ba0-87ba-5bcbfef7461c

/measurement-sets/IGVFDS6590HDLA/

IGVFDS6590HDLA

charles-gersbach:cd8-tcells-rna-seq-chronic-activation-gfp-rep2

/assay-terms/OBI_0003090/

/awards/HG012053/

/human-donors/IGVFDO1522NSLA/

experimental data

/labs/charles-gersbach/

RNA-seq

https://www.protocols.io/view/rnaseq-of-primary-human-t-cells-overexpressing-bat-c5pdy5i6

/primary-cells/IGVFSM3805WZUU/

released

RNA-seq integrating a control transduction expression vector library

Homo sapiens

d8779b73-2f3f-4a26-b8e9-7413639cb82b

/analysis-sets/IGVFDS3609QWUZ/

IGVFDS3609QWUZ

charles-gersbach:cd8-tcells-intermediate-set-atac-seq-chronic-activation-gfp

/awards/HG012053/

/human-donors/IGVFDO1522NSLA/, /human-donors/IGVFDO9588OERW/

intermediate analysis

/measurement-sets/IGVFDS3810SJRN/, /measurement-sets/IGVFDS9111EVGC/

/labs/charles-gersbach/

https://www.protocols.io/view/atac-seq-primary-human-t-cells-overexpressing-batf-c5pfy5jn

CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library

/primary-cells/IGVFSM3805WZUU/, /primary-cells/IGVFSM6508DFUL/

released

ATAC-seq: alignments

Homo sapiens

6fa0baa8-8e86-4903-8cd6-a10a46123b0e

/measurement-sets/IGVFDS9111EVGC/

IGVFDS9111EVGC

charles-gersbach:cd8-tcells-atac-seq-chronic-activation-gfp-rep2

/assay-terms/OBI_0003089/

/awards/HG012053/

/human-donors/IGVFDO1522NSLA/

experimental data

/labs/charles-gersbach/

ATAC-seq

https://www.protocols.io/view/atac-seq-primary-human-t-cells-overexpressing-batf-c5pfy5jn

/primary-cells/IGVFSM3805WZUU/

released

ATAC-seq integrating a control transduction expression vector library

Homo sapiens

50157920-f8e1-433c-823d-0da397c8e9b3

/analysis-sets/IGVFDS3105CGSW/

IGVFDS3105CGSW

charles-gersbach:cd8-tcells-intermediate-analysis-rna-seq-batf3-overexpression-gfp

/awards/HG012053/

/human-donors/IGVFDO1522NSLA/, /human-donors/IGVFDO9588OERW/, /human-donors/IGVFDO8289ZMDD/

intermediate analysis

/measurement-sets/IGVFDS4221ZTFC/, /measurement-sets/IGVFDS6590HDLA/, /measurement-sets/IGVFDS4808GJDM/

/labs/charles-gersbach/

https://www.protocols.io/view/rnaseq-of-primary-human-t-cells-overexpressing-bat-c5pdy5i6

CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library

/primary-cells/IGVFSM3805WZUU/, /primary-cells/IGVFSM6508DFUL/, /primary-cells/IGVFSM4633QTQY/

released

RNA-seq: transcriptome alignments

Homo sapiens

487d9da3-d8e0-4984-949a-72d727a43ed1

/analysis-sets/IGVFDS4582MPNU/

IGVFDS4582MPNU

charles-gersbach:cd8-tcells-analysis-set-rna-seq-batf3-overexpression

/awards/HG012053/

/human-donors/IGVFDO8289ZMDD/, /human-donors/IGVFDO9588OERW/, /human-donors/IGVFDO1522NSLA/

principal analysis

/analysis-sets/IGVFDS5066GYDY/, /analysis-sets/IGVFDS3105CGSW/

/labs/charles-gersbach/

CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library

/primary-cells/IGVFSM0218YCAH/, /primary-cells/IGVFSM7232YAVV/, /primary-cells/IGVFSM3805WZUU/, /primary-cells/IGVFSM6508DFUL/, /primary-cells/IGVFSM8821YQXI/, /primary-cells/IGVFSM4633QTQY/

released

RNA-seq: fold change over control, transcript quantifications

Homo sapiens

25476ba5-abdf-49e7-8a37-14a48fa7c22f