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experimental data
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gRNA sequencing
1
guide RNAs
1
intermediate analysis
1
principal analysis
1
samples.@id
/primary-cells/IGVFSM3795JDHP/
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UUID
/auxiliary-sets/IGVFDS8029DSPH/
IGVFDS8029DSPH
charles-gersbach:cd8-tcells-perturb-seq-crispri-grna-rep1
/awards/HG012053/
/human-donors/IGVFDO7605NZFO/
gRNA sequencing
/labs/charles-gersbach/
/measurement-sets/IGVFDS9813VHFD/
/primary-cells/IGVFSM3795JDHP/
released
gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
Homo sapiens
b8968c2d-2f02-4a7e-836a-e066ab185b40
/analysis-sets/IGVFDS3319RFFN/
IGVFDS3319RFFN
charles-gersbach:cd8-tcells-intermediate-analysis-set-perturb-seq-crispri
/awards/HG012053/
/human-donors/IGVFDO4425KRAT/
,
/human-donors/IGVFDO7605NZFO/
,
/human-donors/IGVFDO6082RNLT/
intermediate analysis
/measurement-sets/IGVFDS9813VHFD/
,
/measurement-sets/IGVFDS1333MBPK/
,
/measurement-sets/IGVFDS9674AATW/
,
/auxiliary-sets/IGVFDS8029DSPH/
,
/auxiliary-sets/IGVFDS2399UCGA/
,
/auxiliary-sets/IGVFDS0591VNKJ/
/labs/charles-gersbach/
https://www.protocols.io/view/crispri-tiling-screens-c5rby52n
,
https://www.protocols.io/view/perturb-seq-characterizing-regulators-of-t-cell-fu-c5s9y6h6
CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
/primary-cells/IGVFSM5189UBOI/
,
/primary-cells/IGVFSM3795JDHP/
,
/primary-cells/IGVFSM2747RJFY/
released
interference Perturb-seq: filtered feature barcode matrix
Homo sapiens
a3440e6a-acb8-439d-9251-56f3d3f1374b
/measurement-sets/IGVFDS9813VHFD/
IGVFDS9813VHFD
charles-gersbach:cd8-tcells-perturb-seq-crispri-gex-rep1
/assay-terms/OBI_0003660/
/awards/HG012053/
/human-donors/IGVFDO7605NZFO/
experimental data
/labs/charles-gersbach/
Perturb-seq
https://www.protocols.io/view/perturb-seq-characterizing-regulators-of-t-cell-fu-c5s9y6h6
,
https://www.protocols.io/view/crispri-tiling-screens-c5rby52n
/primary-cells/IGVFSM3795JDHP/
released
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
Homo sapiens
3d7040d7-c833-412d-af01-35875b358070
/curated-sets/IGVFDS4729GLXH/
IGVFDS4729GLXH
charles-gersbach:cd8-tcells-perturb-seq-grnas-set
GRCh38
/awards/HG012053/
guide RNAs
/labs/charles-gersbach/
/primary-cells/IGVFSM8036VPRU/
,
/primary-cells/IGVFSM6223YCQV/
,
/primary-cells/IGVFSM2105CLXS/
,
/primary-cells/IGVFSM3795JDHP/
,
/primary-cells/IGVFSM2747RJFY/
,
/primary-cells/IGVFSM5189UBOI/
released
Homo sapiens GRCh38 guide RNAs
Homo sapiens
2d8ec354-8116-4b47-b49c-a911d999e242
/analysis-sets/IGVFDS9445RJOU/
IGVFDS9445RJOU
charles-gersbach:cd8-tcells-analysis-set-perturb-seq-crispri
/awards/HG012053/
/human-donors/IGVFDO4425KRAT/
,
/human-donors/IGVFDO7605NZFO/
,
/human-donors/IGVFDO6082RNLT/
principal analysis
/analysis-sets/IGVFDS3319RFFN/
/labs/charles-gersbach/
CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
/primary-cells/IGVFSM3795JDHP/
,
/primary-cells/IGVFSM5189UBOI/
,
/primary-cells/IGVFSM2747RJFY/
released
interference Perturb-seq: differential gene expression quantifications
Homo sapiens
1a381cc5-1cc7-44f3-8dc0-9040e30e8cd5