IGVF

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File Set Type

experimental data
1
intermediate analysis
1
principal analysis
1

samples.@id

/primary-cells/IGVFSM1311HWOF/

3 items

/analysis-sets/IGVFDS4430NOFL/

IGVFDS4430NOFL

charles-gersbach:cd8-tcells-intermediate-analysis-rna-seq-cas-ko-znf217

/awards/HG012053/

/human-donors/IGVFDO8565PQXZ/, /human-donors/IGVFDO7589UJKG/, /human-donors/IGVFDO4048LCOU/

intermediate analysis

/measurement-sets/IGVFDS3760HQCL/, /measurement-sets/IGVFDS4636NLRL/, /measurement-sets/IGVFDS3198NMHN/

/labs/charles-gersbach/

https://www.protocols.io/view/tfome-crisprko-screens-81wgbxk8olpk/v1, https://www.protocols.io/view/rnaseq-of-primary-human-t-cells-overexpressing-bat-c5pdy5i6

CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library

/primary-cells/IGVFSM1311HWOF/, /primary-cells/IGVFSM5367RVVU/, /primary-cells/IGVFSM5949AWIH/

released

knockout RNA-seq: transcriptome alignments

Homo sapiens

dff2d881-73ed-413d-888f-11c0015c09cd

/analysis-sets/IGVFDS9906UGWB/

IGVFDS9906UGWB

charles-gersbach:cd8-tcells-analysis-set-rna-seq-cas-ko-znf217

/awards/HG012053/

/human-donors/IGVFDO8565PQXZ/, /human-donors/IGVFDO7589UJKG/, /human-donors/IGVFDO4048LCOU/

principal analysis

/analysis-sets/IGVFDS4430NOFL/, /analysis-sets/IGVFDS6924DJJC/

/labs/charles-gersbach/

CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library

/primary-cells/IGVFSM1498WFCO/, /primary-cells/IGVFSM0383IKGE/, /primary-cells/IGVFSM5949AWIH/, /primary-cells/IGVFSM5367RVVU/, /primary-cells/IGVFSM1311HWOF/, /primary-cells/IGVFSM6537MPGY/

released

knockout RNA-seq: fold change over control, transcript quantifications

Homo sapiens

bd513393-12b9-40a3-b24f-d528d7f8dc24

/measurement-sets/IGVFDS4636NLRL/

IGVFDS4636NLRL

charles-gersbach:cd8-tcells-rna-seq-cas-ko-znf217-rep2

/assay-terms/OBI_0003090/

/awards/HG012053/

/human-donors/IGVFDO7589UJKG/

experimental data

/labs/charles-gersbach/

RNA-seq

https://www.protocols.io/view/tfome-crisprko-screens-81wgbxk8olpk/v1, https://www.protocols.io/view/rnaseq-of-primary-human-t-cells-overexpressing-bat-c5pdy5i6

/primary-cells/IGVFSM1311HWOF/

released

CRISPR knockout RNA-seq integrating a guide (sgRNA) library targeting transcription start sites in ZNF217

Homo sapiens

b0a08668-0332-42da-b97e-a7be3d43a6f1