IGVF

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File Set Type

experimental data
1
intermediate analysis
1
principal analysis
1

samples.@id

/primary-cells/IGVFSM0829UPAR/

3 items

/measurement-sets/IGVFDS0416TFEL/

IGVFDS0416TFEL

charles-gersbach:cd8-tcells-rna-seq-cas-ko-gata3-rep2

/assay-terms/OBI_0003090/

/awards/HG012053/

/human-donors/IGVFDO7589UJKG/

experimental data

/labs/charles-gersbach/

RNA-seq

https://www.protocols.io/view/tfome-crisprko-screens-81wgbxk8olpk/v1, https://www.protocols.io/view/rnaseq-of-primary-human-t-cells-overexpressing-bat-c5pdy5i6

/primary-cells/IGVFSM0829UPAR/

released

CRISPR knockout RNA-seq integrating a guide (sgRNA) library targeting transcription start sites in GATA3

Homo sapiens

f0b01f8e-29a1-4ca0-9215-5df9e7587299

/analysis-sets/IGVFDS0006MFFD/

IGVFDS0006MFFD

charles-gersbach:cd8-tcells-intermediate-analysis-rna-seq-cas-ko-gata3

/awards/HG012053/

/human-donors/IGVFDO8565PQXZ/, /human-donors/IGVFDO7589UJKG/, /human-donors/IGVFDO4048LCOU/

intermediate analysis

/measurement-sets/IGVFDS0870PAHS/, /measurement-sets/IGVFDS0416TFEL/, /measurement-sets/IGVFDS3969UCCQ/

/labs/charles-gersbach/

https://www.protocols.io/view/tfome-crisprko-screens-81wgbxk8olpk/v1, https://www.protocols.io/view/rnaseq-of-primary-human-t-cells-overexpressing-bat-c5pdy5i6

CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library

/primary-cells/IGVFSM7117ATUZ/, /primary-cells/IGVFSM0829UPAR/, /primary-cells/IGVFSM9627TJZO/

released

knockout RNA-seq: transcriptome alignments

Homo sapiens

c10bcb2b-b7a3-47a2-b515-617df0549089

/analysis-sets/IGVFDS7239LNZO/

IGVFDS7239LNZO

charles-gersbach:cd8-tcells-analysis-set-rna-seq-cas-ko-gata3

/awards/HG012053/

/human-donors/IGVFDO8565PQXZ/, /human-donors/IGVFDO7589UJKG/, /human-donors/IGVFDO4048LCOU/

principal analysis

/analysis-sets/IGVFDS0006MFFD/, /analysis-sets/IGVFDS6924DJJC/

/labs/charles-gersbach/

CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library

/primary-cells/IGVFSM7117ATUZ/, /primary-cells/IGVFSM0829UPAR/, /primary-cells/IGVFSM0383IKGE/, /primary-cells/IGVFSM9627TJZO/, /primary-cells/IGVFSM1498WFCO/, /primary-cells/IGVFSM6537MPGY/

released

knockout RNA-seq: fold change over control, transcript quantifications

Homo sapiens

88683a11-57fd-4f64-b2ff-4a7c3324e13c