IGVF

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File Set Type

barcodes
1
experimental data
1
intermediate analysis
1
principal analysis
1

samples.@id

/multiplexed-samples/IGVFSM6546CQJB/

4 items

/measurement-sets/IGVFDS0095QJOI/

IGVFDS0095QJOI

ali-mortazavi:B01_13F_illumina

/assay-terms/OBI_0003109/

/awards/HG012077/

/rodent-donors/IGVFDO3261YWHI/, /rodent-donors/IGVFDO7361LABA/, /rodent-donors/IGVFDO9333ACQP/, /rodent-donors/IGVFDO1486RZJK/, /rodent-donors/IGVFDO6942KQBN/, /rodent-donors/IGVFDO8652OFEQ/, /rodent-donors/IGVFDO0493VGMC/, /rodent-donors/IGVFDO4816HOFW/

experimental data

/labs/ali-mortazavi/

Parse SPLiT-seq

https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1, https://www.protocols.io/view/evercode-wt-v2-2-1-eq2lyj9relx9/v1, https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-cryopreser-4r3l22y2pl1y/v1

/multiplexed-samples/IGVFSM6546CQJB/

mRNA enriched

released

Parse SPLiT-seq

Mus musculus

eb8d7e3a-1c95-420c-9444-c1911c636904

/curated-sets/IGVFDS9339IZIB/

IGVFDS9339IZIB

/awards/HG012077/

Barcode to tissue sample mapping

barcodes

/labs/ali-mortazavi/

/multiplexed-samples/IGVFSM1676SYRC/, /multiplexed-samples/IGVFSM1955RVUC/, /multiplexed-samples/IGVFSM8093RPKR/, /multiplexed-samples/IGVFSM9603DIDI/, /multiplexed-samples/IGVFSM6958ESMJ/, /multiplexed-samples/IGVFSM6546CQJB/, /multiplexed-samples/IGVFSM8722YQAW/, /multiplexed-samples/IGVFSM2294BOOU/

released

Mus musculus barcodes

Mus musculus

b96b4b5c-b190-4008-b9fe-9570fd1e5173

/analysis-sets/IGVFDS4883TFKC/

IGVFDS4883TFKC

ali-mortazavi:IGVF_B01_LeftCortex

/awards/HG012077/

Lab processed snRNA-seq gene counts with clusters and cell type annotations for IGVF C57BL/6J and Castaneus left cortex bridge samples

/rodent-donors/IGVFDO6942KQBN/, /rodent-donors/IGVFDO1486RZJK/, /rodent-donors/IGVFDO4816HOFW/, /rodent-donors/IGVFDO7361LABA/, /rodent-donors/IGVFDO8652OFEQ/, /rodent-donors/IGVFDO3261YWHI/, /rodent-donors/IGVFDO9333ACQP/, /rodent-donors/IGVFDO0493VGMC/

principal analysis

/analysis-sets/IGVFDS9520PLLU/, /analysis-sets/IGVFDS7323SUVK/, /analysis-sets/IGVFDS0223KLTB/, /analysis-sets/IGVFDS2413FYLA/, /analysis-sets/IGVFDS2762DTQI/, /analysis-sets/IGVFDS3636WTST/, /analysis-sets/IGVFDS5115IZVN/, /analysis-sets/IGVFDS8648GJCE/

/labs/ali-mortazavi/

left cerebral cortex multiplexed sample

/multiplexed-samples/IGVFSM9603DIDI/, /multiplexed-samples/IGVFSM6958ESMJ/, /multiplexed-samples/IGVFSM1676SYRC/, /multiplexed-samples/IGVFSM6546CQJB/, /multiplexed-samples/IGVFSM8722YQAW/, /multiplexed-samples/IGVFSM2294BOOU/, /multiplexed-samples/IGVFSM8093RPKR/, /multiplexed-samples/IGVFSM1955RVUC/

released

Parse SPLiT-seq: sparse gene count matrix

Mus musculus

a036861e-a44b-44e8-a904-138f3b8af431

/analysis-sets/IGVFDS3636WTST/

IGVFDS3636WTST

ali-mortazavi:IGVF_B01_subpool_6

/awards/HG012077/

Lab processed snRNA-seq gene counts with clusters and cell type annotations for IGVF C57BL/6J and Castaneus left cortex bridge subpool 6

/rodent-donors/IGVFDO1486RZJK/, /rodent-donors/IGVFDO8652OFEQ/, /rodent-donors/IGVFDO6942KQBN/, /rodent-donors/IGVFDO3261YWHI/, /rodent-donors/IGVFDO0493VGMC/, /rodent-donors/IGVFDO7361LABA/, /rodent-donors/IGVFDO9333ACQP/, /rodent-donors/IGVFDO4816HOFW/

intermediate analysis

/measurement-sets/IGVFDS0095QJOI/

/labs/ali-mortazavi/

https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1, https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-cryopreser-4r3l22y2pl1y/v1, https://www.protocols.io/view/evercode-wt-v2-2-1-eq2lyj9relx9/v1

left cerebral cortex multiplexed sample

/multiplexed-samples/IGVFSM6546CQJB/

released

Parse SPLiT-seq: sparse gene count matrix

Mus musculus

541534e7-a3e2-419d-946b-2f9105837d09