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samples.@id
/multiplexed-samples/IGVFSM4547BFMA/
4 items
IGVFDS3910GBDQ
  • ansuman-satpathy:snATAC-seq_igvf10_10x1
single-nucleus ATAC-seq
false
No limitations
reads, seqspec
experimental data
10x multiome with MULTI-seq
multiplexed sample: Homo sapiens (male) Jurkat cell line treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; Homo sapiens (female) K562 cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples
released
interference single-nucleus ATAC-seq (10x multiome with MULTI-seq)
IGVFDS2018URDY
  • ansuman-satpathy:igvf10_analysis_set
  • ansuman-satpathy:igvf10_analysis_set_10x1
false
No limitations
fragments, peaks, index, raw feature barcode matrix, cell hashing barcodes
intermediate analysis
multiplexed sample: Homo sapiens (male) Jurkat cell line treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; Homo sapiens (female) K562 cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples
Homo sapiens multiplexed sample of Jurkat, K562, THP-1, TeloHAEC, stimulated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours, modified with CRISPRi Sp-dCas9-KOX1-KRAB
released
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
IGVFDS9295POCI
  • ansuman-satpathy:multiseq_igvf10_10x1
false
No limitations
reads, seqspec
lipid-conjugated oligo sequencing
multiplexed sample: Homo sapiens (male) Jurkat cell line treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; Homo sapiens (female) K562 cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples
released
lipid-conjugated oligo sequencing for interference single-nucleus ATAC-seq (10x multiome with MULTI-seq), interference single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
IGVFDS2246RAZO
  • ansuman-satpathy:snRNA-seq_igvf10_10x1
single-nucleus RNA sequencing assay
false
No limitations
reads, seqspec
experimental data
10x multiome with MULTI-seq
multiplexed sample: Homo sapiens (male) Jurkat cell line treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; Homo sapiens (female) K562 cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples
released
interference single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)