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samples.@id
samples.@id
/multiplexed-samples/IGVFSM4547BFMA/
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Measurement Sets
Preferred Assay Title
Sample Summary
Samples
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Summary
/measurement-sets/IGVFDS3910GBDQ/
IGVFDS3910GBDQ
ansuman-satpathy:snATAC-seq_igvf10_10x1
single-nucleus ATAC-seq
/human-donors/IGVFDO3459DFTW/
,
/human-donors/IGVFDO9208RPQQ/
,
/human-donors/IGVFDO1080XFGV/
,
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/ansuman-satpathy/
10x multiome with MULTI-seq
multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples
/multiplexed-samples/IGVFSM4547BFMA/
released
interference single-nucleus ATAC-seq (10x multiome with MULTI-seq)
/analysis-sets/IGVFDS2018URDY/
IGVFDS2018URDY
ansuman-satpathy:igvf10_analysis_set
/human-donors/IGVFDO1080XFGV/
,
/human-donors/IGVFDO7359LVPI/
,
/human-donors/IGVFDO9208RPQQ/
,
/human-donors/IGVFDO3459DFTW/
intermediate analysis
/labs/ansuman-satpathy/
multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples
/multiplexed-samples/IGVFSM0539NUPM/
,
/multiplexed-samples/IGVFSM4547BFMA/
released
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
/auxiliary-sets/IGVFDS9295POCI/
IGVFDS9295POCI
ansuman-satpathy:multiseq_igvf10_10x1
/human-donors/IGVFDO9208RPQQ/
,
/human-donors/IGVFDO1080XFGV/
,
/human-donors/IGVFDO7359LVPI/
,
/human-donors/IGVFDO3459DFTW/
lipid-conjugated oligo sequencing
/labs/ansuman-satpathy/
/measurement-sets/IGVFDS3910GBDQ/
,
/measurement-sets/IGVFDS2246RAZO/
multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples
/multiplexed-samples/IGVFSM4547BFMA/
released
lipid-conjugated oligo sequencing for interference single-nucleus ATAC-seq (10x multiome with MULTI-seq), interference single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
/measurement-sets/IGVFDS2246RAZO/
IGVFDS2246RAZO
ansuman-satpathy:snRNA-seq_igvf10_10x1
single-nucleus RNA sequencing assay
/human-donors/IGVFDO1080XFGV/
,
/human-donors/IGVFDO7359LVPI/
,
/human-donors/IGVFDO9208RPQQ/
,
/human-donors/IGVFDO3459DFTW/
experimental data
/labs/ansuman-satpathy/
10x multiome with MULTI-seq
multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples
/multiplexed-samples/IGVFSM4547BFMA/
released
interference single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)