IGVF

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/multiplexed-samples/IGVFSM4392KEFB/

4 items

/measurement-sets/IGVFDS1427CODJ/

IGVFDS1427CODJ

ansuman-satpathy:snATAC-seq_igvf18_10x1

single-nucleus ATAC-seq

/human-donors/IGVFDO3459DFTW/, /human-donors/IGVFDO4200NZSV/, /human-donors/IGVFDO9018OPIO/, /human-donors/IGVFDO0965QSBA/, /human-donors/IGVFDO0384OZRW/, /human-donors/IGVFDO7503RZHO/

experimental data

/labs/ansuman-satpathy/

10x multiome with MULTI-seq

multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples

/multiplexed-samples/IGVFSM4392KEFB/

released

single-nucleus ATAC-seq (10x multiome with MULTI-seq)

/measurement-sets/IGVFDS1210CYWP/

IGVFDS1210CYWP

ansuman-satpathy:snRNA-seq_igvf18_10x1

single-nucleus RNA sequencing assay

/human-donors/IGVFDO3459DFTW/, /human-donors/IGVFDO9018OPIO/, /human-donors/IGVFDO0384OZRW/, /human-donors/IGVFDO4200NZSV/, /human-donors/IGVFDO7503RZHO/, /human-donors/IGVFDO0965QSBA/

experimental data

/labs/ansuman-satpathy/

10x multiome with MULTI-seq

multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples

/multiplexed-samples/IGVFSM4392KEFB/

released

single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)

/auxiliary-sets/IGVFDS7168GITK/

IGVFDS7168GITK

ansuman-satpathy:multiseq_igvf18_10x1

/human-donors/IGVFDO4200NZSV/, /human-donors/IGVFDO0965QSBA/, /human-donors/IGVFDO0384OZRW/, /human-donors/IGVFDO9018OPIO/, /human-donors/IGVFDO3459DFTW/, /human-donors/IGVFDO7503RZHO/

lipid-conjugated oligo sequencing

/labs/ansuman-satpathy/

/measurement-sets/IGVFDS1210CYWP/, /measurement-sets/IGVFDS1427CODJ/

multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples

/multiplexed-samples/IGVFSM4392KEFB/

released

lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)

/analysis-sets/IGVFDS4963SRAJ/

IGVFDS4963SRAJ

ansuman-satpathy:igvf18_analysis_set

/human-donors/IGVFDO0384OZRW/, /human-donors/IGVFDO9018OPIO/, /human-donors/IGVFDO7503RZHO/, /human-donors/IGVFDO3459DFTW/, /human-donors/IGVFDO0965QSBA/, /human-donors/IGVFDO4200NZSV/

intermediate analysis

/labs/ansuman-satpathy/

multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples

/multiplexed-samples/IGVFSM3125MLLP/, /multiplexed-samples/IGVFSM4392KEFB/, /multiplexed-samples/IGVFSM9642EHZY/, /multiplexed-samples/IGVFSM5815WALV/

released

10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix