IGVF

Click and hold a term momentarily to select items without that term.

/multiplexed-samples/IGVFSM4392KEFB/

4 items

/measurement-sets/IGVFDS1427CODJ/

IGVFDS1427CODJ

ansuman-satpathy:snATAC-seq_igvf18_10x1

single-nucleus ATAC-seq

false

No limitations

/human-donors/IGVFDO9018OPIO/, /human-donors/IGVFDO0384OZRW/, /human-donors/IGVFDO4200NZSV/, /human-donors/IGVFDO3459DFTW/, /human-donors/IGVFDO7503RZHO/, /human-donors/IGVFDO0965QSBA/

reads, seqspec

experimental data

/labs/ansuman-satpathy/

10x multiome with MULTI-seq

/institutional-certificates/20743336-7ae0-4e51-ab85-4ef4401b9b7d/, /institutional-certificates/4ff60cda-a674-443c-8864-009fa16b9f43/

multiplexed sample: Homo sapiens (female) IMR-90 cell line; Homo sapiens (female) MCF-7 cell line; ... and 17 more samples

/multiplexed-samples/IGVFSM4392KEFB/

released

single-nucleus ATAC-seq (10x multiome with MULTI-seq)

/measurement-sets/IGVFDS1210CYWP/

IGVFDS1210CYWP

ansuman-satpathy:snRNA-seq_igvf18_10x1

single-nucleus RNA sequencing assay

false

No limitations

/human-donors/IGVFDO9018OPIO/, /human-donors/IGVFDO0384OZRW/, /human-donors/IGVFDO4200NZSV/, /human-donors/IGVFDO3459DFTW/, /human-donors/IGVFDO7503RZHO/, /human-donors/IGVFDO0965QSBA/

reads, seqspec

experimental data

/labs/ansuman-satpathy/

10x multiome with MULTI-seq

/institutional-certificates/20743336-7ae0-4e51-ab85-4ef4401b9b7d/, /institutional-certificates/4ff60cda-a674-443c-8864-009fa16b9f43/

multiplexed sample: Homo sapiens (female) IMR-90 cell line; Homo sapiens (female) MCF-7 cell line; ... and 17 more samples

/multiplexed-samples/IGVFSM4392KEFB/

released

single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)

/auxiliary-sets/IGVFDS7168GITK/

IGVFDS7168GITK

ansuman-satpathy:multiseq_igvf18_10x1

false

No limitations

/human-donors/IGVFDO0965QSBA/, /human-donors/IGVFDO0384OZRW/, /human-donors/IGVFDO7503RZHO/, /human-donors/IGVFDO3459DFTW/, /human-donors/IGVFDO9018OPIO/, /human-donors/IGVFDO4200NZSV/

reads, seqspec

lipid-conjugated oligo sequencing

/labs/ansuman-satpathy/

/measurement-sets/IGVFDS1210CYWP/, /measurement-sets/IGVFDS1427CODJ/

/institutional-certificates/20743336-7ae0-4e51-ab85-4ef4401b9b7d/, /institutional-certificates/4ff60cda-a674-443c-8864-009fa16b9f43/

multiplexed sample: Homo sapiens (female) IMR-90 cell line; Homo sapiens (female) MCF-7 cell line; ... and 17 more samples

/multiplexed-samples/IGVFSM4392KEFB/

released

lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)

/analysis-sets/IGVFDS4963SRAJ/

IGVFDS4963SRAJ

ansuman-satpathy:igvf18_analysis_set
ansuman-satpathy:igvf18_analysis_set_10x1

false

No limitations

/human-donors/IGVFDO4200NZSV/, /human-donors/IGVFDO0384OZRW/, /human-donors/IGVFDO3459DFTW/, /human-donors/IGVFDO7503RZHO/, /human-donors/IGVFDO0965QSBA/, /human-donors/IGVFDO9018OPIO/

fragments, peaks, index, raw feature barcode matrix, cell hashing barcodes

intermediate analysis

/labs/ansuman-satpathy/

/institutional-certificates/20743336-7ae0-4e51-ab85-4ef4401b9b7d/, /institutional-certificates/4ff60cda-a674-443c-8864-009fa16b9f43/

multiplexed sample: Homo sapiens (female) IMR-90 cell line; Homo sapiens (female) MCF-7 cell line; ... and 17 more samples

/multiplexed-samples/IGVFSM4392KEFB/

Homo sapiens multiplexed sample of HCT116, HUDEP-2, IMR-90, MCF-7, SK-N-SH, TeloHAEC, perturbed with 3 μM Yoda1 for 4 hours

released

single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)