IGVFDS9339IZIB

Barcode to tissue sample mapping

barcodes

/multiplexed-samples/IGVFSM1676SYRC/, /multiplexed-samples/IGVFSM1955RVUC/, /multiplexed-samples/IGVFSM8093RPKR/, /multiplexed-samples/IGVFSM9603DIDI/, /multiplexed-samples/IGVFSM6958ESMJ/, /multiplexed-samples/IGVFSM6546CQJB/, /multiplexed-samples/IGVFSM8722YQAW/, /multiplexed-samples/IGVFSM2294BOOU/

released

Mus musculus barcodes

Mus musculus

b96b4b5c-b190-4008-b9fe-9570fd1e5173

IGVFDS8648GJCE

Lab processed snRNA-seq gene counts with clusters and cell type annotations for IGVF C57BL/6J and Castaneus left cortex bridge subpool 8

/rodent-donors/IGVFDO3261YWHI/, /rodent-donors/IGVFDO7361LABA/, /rodent-donors/IGVFDO9333ACQP/, /rodent-donors/IGVFDO1486RZJK/, /rodent-donors/IGVFDO6942KQBN/, /rodent-donors/IGVFDO8652OFEQ/, /rodent-donors/IGVFDO0493VGMC/, /rodent-donors/IGVFDO4816HOFW/

intermediate analysis

https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-cryopreser-4r3l22y2pl1y/v1, https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1, https://www.protocols.io/view/evercode-wt-v2-2-1-eq2lyj9relx9/v1

left cerebral cortex multiplexed sample

released

Parse SPLiT-seq: sparse gene count matrix

Mus musculus

b0ec51fa-9a24-428a-aa50-762759cd0de0

IGVFDS4883TFKC

Lab processed snRNA-seq gene counts with clusters and cell type annotations for IGVF C57BL/6J and Castaneus left cortex bridge samples

/rodent-donors/IGVFDO6942KQBN/, /rodent-donors/IGVFDO1486RZJK/, /rodent-donors/IGVFDO4816HOFW/, /rodent-donors/IGVFDO7361LABA/, /rodent-donors/IGVFDO8652OFEQ/, /rodent-donors/IGVFDO3261YWHI/, /rodent-donors/IGVFDO9333ACQP/, /rodent-donors/IGVFDO0493VGMC/

principal analysis

/analysis-sets/IGVFDS9520PLLU/, /analysis-sets/IGVFDS7323SUVK/, /analysis-sets/IGVFDS0223KLTB/, /analysis-sets/IGVFDS2413FYLA/, /analysis-sets/IGVFDS2762DTQI/, /analysis-sets/IGVFDS3636WTST/, /analysis-sets/IGVFDS5115IZVN/, /analysis-sets/IGVFDS8648GJCE/

left cerebral cortex multiplexed sample

/multiplexed-samples/IGVFSM9603DIDI/, /multiplexed-samples/IGVFSM6958ESMJ/, /multiplexed-samples/IGVFSM1676SYRC/, /multiplexed-samples/IGVFSM6546CQJB/, /multiplexed-samples/IGVFSM8722YQAW/, /multiplexed-samples/IGVFSM2294BOOU/, /multiplexed-samples/IGVFSM8093RPKR/, /multiplexed-samples/IGVFSM1955RVUC/

released

Parse SPLiT-seq: sparse gene count matrix

Mus musculus

a036861e-a44b-44e8-a904-138f3b8af431

IGVFDS0356VCIO

/rodent-donors/IGVFDO6942KQBN/, /rodent-donors/IGVFDO4816HOFW/, /rodent-donors/IGVFDO8652OFEQ/, /rodent-donors/IGVFDO9333ACQP/, /rodent-donors/IGVFDO1486RZJK/, /rodent-donors/IGVFDO7361LABA/, /rodent-donors/IGVFDO0493VGMC/, /rodent-donors/IGVFDO3261YWHI/

experimental data

Parse SPLiT-seq

https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1, https://www.protocols.io/view/evercode-wt-v2-2-1-eq2lyj9relx9/v1, https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-cryopreser-4r3l22y2pl1y/v1

mRNA enriched

released

Parse SPLiT-seq

Mus musculus

644602a3-5453-4f35-9813-bc4a76fc2a43

IGVFDS9445YYVB

/rodent-donors/IGVFDO6942KQBN/, /rodent-donors/IGVFDO4816HOFW/, /rodent-donors/IGVFDO8652OFEQ/, /rodent-donors/IGVFDO9333ACQP/, /rodent-donors/IGVFDO1486RZJK/, /rodent-donors/IGVFDO7361LABA/, /rodent-donors/IGVFDO0493VGMC/, /rodent-donors/IGVFDO3261YWHI/

experimental data

Parse SPLiT-seq

https://www.protocols.io/view/evercode-wt-v2-2-1-eq2lyj9relx9/v1, https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-cryopreser-4r3l22y2pl1y/v1, https://www.protocols.io/view/ont-library-prep-for-split-seq-cdna-eq2lyj1xmlx9/v1

mRNA enriched

released

Parse SPLiT-seq

Mus musculus

350328b1-3426-42c6-a4eb-de66913b84ee