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samples.@id
/in-vitro-systems/IGVFSM9542NUGS/
3 items
IGVFDS9078ZWQH
  • jay-shendure:analysis_set_CRISPRa_K562
principal analysis
Homo sapiens (female) K562 cell line (cellular sub pool: 10Xlane2) modified with CRISPRa Sp-dCas9-VP64, transfected with a guide library, Homo sapiens (female) K562 cell line (cellular sub pool: 10Xlane2) modified with CRISPRa Sp-dCas9-VP64-p65-Rta (VPR), transfected with a guide library, Homo sapiens (female) K562 cell line (cellular sub pool: 10Xlane1) modified with CRISPRa Sp-dCas9-VP64, transfected with a guide library, Homo sapiens (female) K562 cell line (cellular sub pool: 10Xlane1) modified with CRISPRa Sp-dCas9-VP64-p65-Rta (VPR), transfected with a guide library
Homo sapiens K562 cell line, modified with CRISPRa Sp-dCas9-VP64, CRISPRa Sp-dCas9-VP64-p65-Rta (VPR), transfected with a guide library
released
scCRISPR activation screen: differential gene expression quantifications, filtered feature barcode matrix
IGVFDS4834SKZS
  • jay-shendure:CRISPRa_singlecell_K562_VPR_10Xlane2_CS1
gRNA sequencing
Homo sapiens (female) K562 cell line (cellular sub pool: 10Xlane2) modified with CRISPRa Sp-dCas9-VP64-p65-Rta (VPR), transfected with a guide library
released
gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci
IGVFDS0508ERUQ
  • jay-shendure:CRISPRa_singlecell_K562_VPR_10Xlane2_exprs
in vitro CRISPR screen using single-cell RNA-seq
experimental data
scCRISPR screen
Homo sapiens (female) K562 cell line (cellular sub pool: 10Xlane2) modified with CRISPRa Sp-dCas9-VP64-p65-Rta (VPR), transfected with a guide library
released
scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci