IGVF

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File Set Type

experimental data
1
intermediate analysis
1
principal analysis
1

samples.@id

/in-vitro-systems/IGVFSM8571KCNL/

3 items

/measurement-sets/IGVFDS5295EBUX/

IGVFDS5295EBUX

charles-gersbach:measurement-set-crispra-control-mouse-hl1-targeted-hicar-rep2

/assay-terms/OBI_0002440/

/awards/HG012053/

/rodent-donors/IGVFDO1434JYIN/

experimental data

/labs/charles-gersbach/

HiCAR

https://www.protocols.io/view/hicar-for-mouse-hl-1-cells-following-enhancer-pert-36wgqn2yygk5

/in-vitro-systems/IGVFSM8571KCNL/

released

CRISPR HiCAR integrating a non-targeting guide (sgRNA) library

Mus musculus

588833a5-8e93-4347-a1f4-244db9e46667

/analysis-sets/IGVFDS2562CZKX/

IGVFDS2562CZKX

charles-gersbach:analysis-set-crispra-control-mouse-hl1-targeted-hicar-rep2-cool

/awards/HG012053/

/rodent-donors/IGVFDO1434JYIN/

intermediate analysis

/measurement-sets/IGVFDS5295EBUX/

/labs/charles-gersbach/

https://www.protocols.io/view/hicar-for-mouse-hl-1-cells-following-enhancer-pert-36wgqn2yygk5

HL-1 cell line, transfected with a guide library

/in-vitro-systems/IGVFSM8571KCNL/

released

HiCAR: contact matrix

Mus musculus

403f81be-6239-4494-8a75-5d5c7783924e

/analysis-sets/IGVFDS0872LUHP/

IGVFDS0872LUHP

charles-gersbach:analysis-set-crispra-HL1-region3-DEanalysis

/awards/HG012053/

/rodent-donors/IGVFDO1434JYIN/

principal analysis

/analysis-sets/IGVFDS3159CKGQ/, /analysis-sets/IGVFDS2562CZKX/, /analysis-sets/IGVFDS7268XYPD/, /analysis-sets/IGVFDS0318CFLU/, /analysis-sets/IGVFDS2723TEYB/, /analysis-sets/IGVFDS4066YEFI/

/labs/charles-gersbach/

HL-1 cell line, transfected with a guide library

/in-vitro-systems/IGVFSM6964SBRF/, /in-vitro-systems/IGVFSM5017HPIL/, /in-vitro-systems/IGVFSM8571KCNL/, /in-vitro-systems/IGVFSM1004RIDZ/, /in-vitro-systems/IGVFSM3147FFHB/, /in-vitro-systems/IGVFSM7656WGBF/

released

HiCAR: bin paired count, differential chromatin contact quantifications

Mus musculus

3e081d4d-f995-4962-a315-a1defb8a8219