IGVF

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File Set Type

cell hashing barcode sequencing
1
experimental data
1
gRNA sequencing
1
principal analysis
1

/in-vitro-systems/IGVFSM8072YOLO/

4 items

/measurement-sets/IGVFDS9614JGLX/

IGVFDS9614JGLX

gary-hon:differentited_WTC11_CM_Pilot2_Mini_PB9_LW437

/assay-terms/OBI_0003660/

/awards/HG011996/

/human-donors/IGVFDO1756PPKO/

experimental data

/labs/gary-hon/

Perturb-seq

https://www.protocols.io/view/experimental-procedures-for-tf-perturb-seq-ut-sout-denf3dbn

/in-vitro-systems/IGVFSM8072YOLO/

preview

CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

a9f3aefe-2b4e-44a3-adee-bec39811c512

/auxiliary-sets/IGVFDS1417TPKZ/

IGVFDS1417TPKZ

gary-hon:differentited_WTC11_CM_Pilot2_Mini_PB9_sgRNA_LW437

/awards/HG011996/

/human-donors/IGVFDO1756PPKO/

gRNA sequencing

/labs/gary-hon/

/measurement-sets/IGVFDS9614JGLX/

/in-vitro-systems/IGVFSM8072YOLO/

preview

gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

94a88d8a-5623-4bdb-a925-78860e473056

/analysis-sets/IGVFDS4252LFRU/

IGVFDS4252LFRU

gary-hon:WTC11_CM_Pilot2_Mini_PB9_PrimaryAnalysis

/awards/HG011996/

/human-donors/IGVFDO1756PPKO/

principal analysis

/measurement-sets/IGVFDS7818HFMO/, /auxiliary-sets/IGVFDS3881UZJT/, /auxiliary-sets/IGVFDS9289FWZN/, /measurement-sets/IGVFDS4615AXMO/, /auxiliary-sets/IGVFDS9781HZZV/, /auxiliary-sets/IGVFDS5210TKRS/, /measurement-sets/IGVFDS9614JGLX/, /auxiliary-sets/IGVFDS1417TPKZ/, /auxiliary-sets/IGVFDS8878JVPZ/, /measurement-sets/IGVFDS0961NLGM/, /auxiliary-sets/IGVFDS0373CFJS/, /auxiliary-sets/IGVFDS3701EFIG/

/labs/gary-hon/

https://www.protocols.io/view/experimental-procedures-for-tf-perturb-seq-ut-sout-denf3dbn

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, modified with CRISPR modifications, transfected with a guide library

/in-vitro-systems/IGVFSM2176YXFG/, /in-vitro-systems/IGVFSM8072YOLO/, /in-vitro-systems/IGVFSM8889XSOR/, /in-vitro-systems/IGVFSM4418NJET/

preview

interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression

Homo sapiens

51e138b8-6ad6-4bee-a743-3f3da05d4073

/auxiliary-sets/IGVFDS8878JVPZ/

IGVFDS8878JVPZ

gary-hon:differentited_WTC11_CM_Pilot2_Mini_PB9_HTO_LW437

/awards/HG011996/

/human-donors/IGVFDO1756PPKO/

cell hashing barcode sequencing

/labs/gary-hon/

/measurement-sets/IGVFDS9614JGLX/

/in-vitro-systems/IGVFSM8072YOLO/

preview

cell hashing barcode sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

16df5318-ccd1-4b61-b7c5-3a6fd191d308