IGVF

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File Set Type

cell hashing barcode sequencing
1
experimental data
1
gRNA sequencing
1
principal analysis
1

/in-vitro-systems/IGVFSM5829AVCL/

4 items

/auxiliary-sets/IGVFDS1182KBMU/

IGVFDS1182KBMU

gary-hon:differentited_H9_CM_Pilot2_Mini_PB9_sgRNA_LW431

/awards/HG011996/

/human-donors/IGVFDO2718IDDQ/

gRNA sequencing

/labs/gary-hon/

/measurement-sets/IGVFDS5502LTCL/

/in-vitro-systems/IGVFSM5829AVCL/

preview

gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

a5b3fc1c-9277-485b-ae68-ac6ff580a4e8

/measurement-sets/IGVFDS5502LTCL/

IGVFDS5502LTCL

gary-hon:differentited_H9_CM_Pilot2_Mini_PB9_LW431

/assay-terms/OBI_0003660/

/awards/HG011996/

/human-donors/IGVFDO2718IDDQ/

experimental data

/labs/gary-hon/

Perturb-seq

https://www.protocols.io/view/experimental-procedures-for-tf-perturb-seq-ut-sout-denf3dbn

/in-vitro-systems/IGVFSM5829AVCL/

preview

CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

996c6339-cb2d-4cc0-a783-94c475fd0382

/analysis-sets/IGVFDS2266YDVM/

IGVFDS2266YDVM

gary-hon:H9_CM_Pilot2_Mini_PB9_PrimaryAnalysis

/awards/HG011996/

/human-donors/IGVFDO2718IDDQ/

principal analysis

/measurement-sets/IGVFDS5502LTCL/, /auxiliary-sets/IGVFDS1182KBMU/, /auxiliary-sets/IGVFDS2275IPCJ/, /measurement-sets/IGVFDS8183DTKY/, /auxiliary-sets/IGVFDS5403GYDH/, /auxiliary-sets/IGVFDS6475OLUM/, /measurement-sets/IGVFDS8751LXWJ/, /auxiliary-sets/IGVFDS3919NBFE/, /auxiliary-sets/IGVFDS3774FYIW/, /measurement-sets/IGVFDS7288IQLC/, /auxiliary-sets/IGVFDS0785CQUX/, /auxiliary-sets/IGVFDS1340IBKW/

/labs/gary-hon/

https://www.protocols.io/view/experimental-procedures-for-tf-perturb-seq-ut-sout-denf3dbn

H9 differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, modified with CRISPR modifications, transfected with a guide library

/in-vitro-systems/IGVFSM8133YEXK/, /in-vitro-systems/IGVFSM5829AVCL/, /in-vitro-systems/IGVFSM3839SOTK/, /in-vitro-systems/IGVFSM1513DHGW/

preview

interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression

Homo sapiens

9459771b-9580-4cf8-9ca5-757bc9a1f303

/auxiliary-sets/IGVFDS2275IPCJ/

IGVFDS2275IPCJ

gary-hon:differentited_H9_CM_Pilot2_Mini_PB9_HTO_LW431

/awards/HG011996/

/human-donors/IGVFDO2718IDDQ/

cell hashing barcode sequencing

/labs/gary-hon/

/measurement-sets/IGVFDS5502LTCL/

/in-vitro-systems/IGVFSM5829AVCL/

preview

cell hashing barcode sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

1291e93d-e097-478c-9858-d0f02aac5f78