IGVF

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File Set Type

experimental data
1
intermediate analysis
1
principal analysis
1

samples.@id

/in-vitro-systems/IGVFSM5017HPIL/

3 items

/measurement-sets/IGVFDS1873QGHK/

IGVFDS1873QGHK

charles-gersbach:measurement-set-crispra-region3-mouse-hl1-targeted-hicar-rep3

/assay-terms/OBI_0002440/

/awards/HG012053/

/rodent-donors/IGVFDO1434JYIN/

experimental data

/labs/charles-gersbach/

HiCAR

https://www.protocols.io/view/hicar-for-mouse-hl-1-cells-following-enhancer-pert-36wgqn2yygk5

/in-vitro-systems/IGVFSM5017HPIL/

released

CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus

Mus musculus

74e834b9-314d-4c20-b57c-ec6e765d74c3

/analysis-sets/IGVFDS0872LUHP/

IGVFDS0872LUHP

charles-gersbach:analysis-set-crispra-HL1-region3-DEanalysis

/awards/HG012053/

/rodent-donors/IGVFDO1434JYIN/

principal analysis

/analysis-sets/IGVFDS3159CKGQ/, /analysis-sets/IGVFDS2562CZKX/, /analysis-sets/IGVFDS7268XYPD/, /analysis-sets/IGVFDS0318CFLU/, /analysis-sets/IGVFDS2723TEYB/, /analysis-sets/IGVFDS4066YEFI/

/labs/charles-gersbach/

HL-1 cell line, transfected with a guide library

/in-vitro-systems/IGVFSM6964SBRF/, /in-vitro-systems/IGVFSM5017HPIL/, /in-vitro-systems/IGVFSM8571KCNL/, /in-vitro-systems/IGVFSM1004RIDZ/, /in-vitro-systems/IGVFSM3147FFHB/, /in-vitro-systems/IGVFSM7656WGBF/

released

HiCAR: bin paired count, differential chromatin contact quantifications

Mus musculus

3e081d4d-f995-4962-a315-a1defb8a8219

/analysis-sets/IGVFDS7268XYPD/

IGVFDS7268XYPD

charles-gersbach:analysis-set-crispra-region3-mouse-hl1-targeted-hicar-rep3-cool

/awards/HG012053/

/rodent-donors/IGVFDO1434JYIN/

intermediate analysis

/measurement-sets/IGVFDS1873QGHK/

/labs/charles-gersbach/

https://www.protocols.io/view/hicar-for-mouse-hl-1-cells-following-enhancer-pert-36wgqn2yygk5

HL-1 cell line, transfected with a guide library

/in-vitro-systems/IGVFSM5017HPIL/

released

HiCAR: contact matrix

Mus musculus

242832d1-4db0-4f8b-9eb6-1762bd3f7d06