IGVF

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File Set Type

experimental data
1
gRNA sequencing
1
principal analysis
1

/in-vitro-systems/IGVFSM4521QSSO/

3 items

/analysis-sets/IGVFDS9078ZWQH/

IGVFDS9078ZWQH

jay-shendure:analysis_set_CRISPRa_K562

/awards/HG011966/

/human-donors/IGVFDO9208RPQQ/

principal analysis

/measurement-sets/IGVFDS4863BMGZ/, /measurement-sets/IGVFDS8535CXVX/, /measurement-sets/IGVFDS7395DPAD/, /measurement-sets/IGVFDS0508ERUQ/, /auxiliary-sets/IGVFDS4502LQQH/, /auxiliary-sets/IGVFDS8929VNCP/, /auxiliary-sets/IGVFDS4621HUKP/, /auxiliary-sets/IGVFDS4834SKZS/

/labs/jay-shendure/

https://www.protocols.io/view/methods-from-multiplex-single-cell-crispra-screeni-c5zvy766

K562 cell line, modified with CRISPR modifications, transfected with a guide library

/in-vitro-systems/IGVFSM4521QSSO/, /in-vitro-systems/IGVFSM9542NUGS/, /in-vitro-systems/IGVFSM9390JSDH/, /in-vitro-systems/IGVFSM1594ZOQH/

released

scCRISPR activation screen: differential gene expression quantifications, sparse gene count matrix

Homo sapiens

5257dd49-492f-49b1-88fd-8b812ae8c188

/measurement-sets/IGVFDS4863BMGZ/

IGVFDS4863BMGZ

jay-shendure:CRISPRa_singlecell_K562_VP64_10Xlane1_exprs

/assay-terms/OBI_0003660/

/awards/HG011966/

/human-donors/IGVFDO9208RPQQ/

experimental data

/labs/jay-shendure/

scCRISPR screen

https://www.protocols.io/view/methods-from-multiplex-single-cell-crispra-screeni-c5zvy766

/in-vitro-systems/IGVFSM4521QSSO/

released

scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci

Homo sapiens

4b1872ed-da59-488b-ad5c-b5ff2a763a76

/auxiliary-sets/IGVFDS4502LQQH/

IGVFDS4502LQQH

jay-shendure:CRISPRa_singlecell_K562_VP64_10Xlane1_CS1

/awards/HG011966/

/human-donors/IGVFDO9208RPQQ/

gRNA sequencing

/labs/jay-shendure/

/measurement-sets/IGVFDS4863BMGZ/

/in-vitro-systems/IGVFSM4521QSSO/

released

gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci

Homo sapiens

0dc9ea2d-ca73-4152-ba67-3f2d3aedad75