IGVF

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File Set Type

cell hashing barcode sequencing
1
experimental data
1
gRNA sequencing
1
principal analysis
1

/in-vitro-systems/IGVFSM1153INDY/

4 items

/measurement-sets/IGVFDS2692VBHQ/

IGVFDS2692VBHQ

gary-hon:TF_Perturb_Seq_Pilot_Lenti_iPSC_LW287

/assay-terms/OBI_0003660/

/awards/HG011996/

/human-donors/IGVFDO1756PPKO/

experimental data

/labs/gary-hon/

Perturb-seq

https://www.protocols.io/view/experimental-procedures-for-tf-perturb-seq-ut-sout-denf3dbn

/in-vitro-systems/IGVFSM1153INDY/

preview

CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

b7e426f1-2366-4598-8009-1993c34e1c20

/analysis-sets/IGVFDS7340YDHF/

IGVFDS7340YDHF

gary-hon:WTC11_TF_Perturb_Seq_Pilot_iPSC_Lenti_PrimaryAnalysis

/awards/HG011996/

/human-donors/IGVFDO1756PPKO/

principal analysis

/measurement-sets/IGVFDS5429CXNB/, /auxiliary-sets/IGVFDS1128FXRR/, /auxiliary-sets/IGVFDS3465KEWH/, /measurement-sets/IGVFDS2692VBHQ/, /auxiliary-sets/IGVFDS1937JPZI/, /auxiliary-sets/IGVFDS2373RGIJ/, /measurement-sets/IGVFDS3975OFAO/, /auxiliary-sets/IGVFDS6503WNZT/, /auxiliary-sets/IGVFDS9718OGWQ/, /measurement-sets/IGVFDS3495FUIW/, /auxiliary-sets/IGVFDS1931QVXR/, /auxiliary-sets/IGVFDS6015JDKU/

/labs/gary-hon/

https://www.protocols.io/view/experimental-procedures-for-tf-perturb-seq-ut-sout-denf3dbn

GM25256 (WTC-11) cell line, modified with CRISPR modifications, transfected with a guide library

/in-vitro-systems/IGVFSM1597KVRS/, /in-vitro-systems/IGVFSM2726ORRN/, /in-vitro-systems/IGVFSM1153INDY/, /in-vitro-systems/IGVFSM9411HZLU/

preview

interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression

Homo sapiens

ab709a68-2d95-46ba-9462-decc91623d62

/auxiliary-sets/IGVFDS2373RGIJ/

IGVFDS2373RGIJ

gary-hon:TF_Perturb_Seq_Pilot_Lenti_iPSC_HTO_LW287

/awards/HG011996/

/human-donors/IGVFDO1756PPKO/

cell hashing barcode sequencing

/labs/gary-hon/

/measurement-sets/IGVFDS2692VBHQ/

/in-vitro-systems/IGVFSM1153INDY/

preview

cell hashing barcode sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

91af8b07-0ae2-4df2-8128-271a45c29f29

/auxiliary-sets/IGVFDS1937JPZI/

IGVFDS1937JPZI

gary-hon:TF_Perturb_Seq_Pilot_Lenti_iPSC_sgRNA_LW287

/awards/HG011996/

/human-donors/IGVFDO1756PPKO/

gRNA sequencing

/labs/gary-hon/

/measurement-sets/IGVFDS2692VBHQ/

/in-vitro-systems/IGVFSM1153INDY/

preview

gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

1de99972-e596-423e-84ad-0d3cf37bf659