Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
FileSet
File Set
Provenance
File Data
Quality
Clear All
Click and hold a term momentarily to select items
without
that term.
File Set Type
All
None
experimental data
48
quantification DNA barcode sequencing
44
circularized RNA barcode detection
6
principal analysis
3
Taxa
All
None
Mus musculus
101
publications.@id
/publications/398edd7f-1ebb-40a0-a04b-450a2565667c/
Download TSV
25 Items
100 Items
300 Items
101 items
1
2
3
4
5
ID
Accession
Aliases
Alternate Accessions
Assay Targeted Genes
Assay Term
Award
Donors
File Set Type
Input File Sets
Lab
Measurement Sets
Preferred Assay Title
Protocols
Samples
Sequencing Library Types
Status
Summary
Taxa
UUID
/auxiliary-sets/IGVFDS8473JDSO/
IGVFDS8473JDSO
jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day4_reads
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
quantification DNA barcode sequencing
/labs/jay-shendure/
/measurement-sets/IGVFDS6355YALJ/
/in-vitro-systems/IGVFSM5978TPKG/
released
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
fdfabd72-0a73-454b-bf93-f598df360118
/measurement-sets/IGVFDS0885VFHW/
IGVFDS0885VFHW
jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day14_reads
/assay-terms/OBI_0002675/
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
experimental data
/labs/jay-shendure/
MPRA
https://www.protocols.io/file/n92rb7r27.pdf
/in-vitro-systems/IGVFSM3546ITTD/
released
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
fb95a9da-2dd1-4f85-b7b7-4604eea3838f
/auxiliary-sets/IGVFDS8746LSXO/
IGVFDS8746LSXO
jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_DNA_day4_reads
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
quantification DNA barcode sequencing
/labs/jay-shendure/
/measurement-sets/IGVFDS8540VFIL/
/in-vitro-systems/IGVFSM3811HZXX/
released
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
faf19294-71cd-4e7c-95ac-c84244c19f8d
/auxiliary-sets/IGVFDS2370ZRIR/
IGVFDS2370ZRIR
jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_DNA_day12_reads
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
quantification DNA barcode sequencing
/labs/jay-shendure/
/measurement-sets/IGVFDS1416HRTP/
/in-vitro-systems/IGVFSM0608PJZS/
released
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
f83917a6-5218-48d1-ab40-660be6d33f71
/auxiliary-sets/IGVFDS3480ASIH/
IGVFDS3480ASIH
jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day14_reads
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
quantification DNA barcode sequencing
/labs/jay-shendure/
/measurement-sets/IGVFDS0885VFHW/
/in-vitro-systems/IGVFSM3546ITTD/
released
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
f3277a3b-4f6d-4df3-b594-bac0bba57102
/measurement-sets/IGVFDS0200DGEO/
IGVFDS0200DGEO
jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day0_reads
/assay-terms/OBI_0002675/
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
experimental data
/labs/jay-shendure/
MPRA
https://www.protocols.io/file/n92rb7r27.pdf
/in-vitro-systems/IGVFSM3228TEOC/
released
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
f0e74acb-f52f-4ec1-bcae-6692cfa1c4c5
/auxiliary-sets/IGVFDS2965JJYR/
IGVFDS2965JJYR
jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day16_reads
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
quantification DNA barcode sequencing
/labs/jay-shendure/
/measurement-sets/IGVFDS9342OPKS/
/in-vitro-systems/IGVFSM8780MGRB/
released
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
e811bd56-cd2d-4c1c-a626-bdd0e66a117e
/measurement-sets/IGVFDS0228POXF/
IGVFDS0228POXF
jay-shendure:dev_CRE_mEBs_GEx_repB_10Xlane1_reads
/assay-terms/OBI_0002675/
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
experimental data
/labs/jay-shendure/
MPRA (scQer)
https://www.protocols.io/file/n92rb7r27.pdf
/in-vitro-systems/IGVFSM8913GAXO/
released
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
e2995b3b-19e4-4d53-ac45-b1d1e503ae14
/auxiliary-sets/IGVFDS6028VFBK/
IGVFDS6028VFBK
jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_DNA_day0_reads
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
quantification DNA barcode sequencing
/labs/jay-shendure/
/measurement-sets/IGVFDS9778WLEE/
/in-vitro-systems/IGVFSM1671CSBE/
released
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
df7e994c-9f19-45f2-990c-5161f75a862d
/auxiliary-sets/IGVFDS7792HFAY/
IGVFDS7792HFAY
jay-shendure:dev_CRE_mEBs_oBC_repA_10Xlane1_reads
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
circularized RNA barcode detection
/labs/jay-shendure/
/measurement-sets/IGVFDS5248DHZT/
/in-vitro-systems/IGVFSM4494VUEQ/
released
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
df0818a9-775d-4e3b-afb8-6001fb72a3db
/measurement-sets/IGVFDS2982RXPU/
IGVFDS2982RXPU
jay-shendure:dev_CRE_mEBs_repA_bulk_RNA_day10_reads
/assay-terms/OBI_0002675/
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
experimental data
/labs/jay-shendure/
MPRA
https://www.protocols.io/file/n92rb7r27.pdf
/in-vitro-systems/IGVFSM1838HBLK/
released
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
dee749f9-5984-4884-8bcd-74d002ccc3fb
/auxiliary-sets/IGVFDS7168JGPF/
IGVFDS7168JGPF
jay-shendure:dev_CRE_mEBs_mBC_repB_10Xlane1_reads
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
quantification DNA barcode sequencing
/labs/jay-shendure/
/measurement-sets/IGVFDS0228POXF/
/in-vitro-systems/IGVFSM8913GAXO/
released
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
de880773-6e13-440f-a424-21519fc805e2
/measurement-sets/IGVFDS8920YVYN/
IGVFDS8920YVYN
jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day12_reads
/assay-terms/OBI_0002675/
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
experimental data
/labs/jay-shendure/
MPRA
https://www.protocols.io/file/n92rb7r27.pdf
/in-vitro-systems/IGVFSM1576AJXB/
released
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
d9a4a933-5717-48f4-ad6f-636415bfce12
/auxiliary-sets/IGVFDS3935KLZM/
IGVFDS3935KLZM
jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_DNA_day8_reads
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
quantification DNA barcode sequencing
/labs/jay-shendure/
/measurement-sets/IGVFDS0571IOSL/
/in-vitro-systems/IGVFSM0091UGGN/
released
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
d923e592-8ef8-49b6-9e36-f4b3ef715fe8
/auxiliary-sets/IGVFDS2989BOYC/
IGVFDS2989BOYC
jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_DNA_day6_reads
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
quantification DNA barcode sequencing
/labs/jay-shendure/
/measurement-sets/IGVFDS5335NRCO/
/in-vitro-systems/IGVFSM5929KNAA/
released
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
d8aec50c-c1ae-4f63-ad24-124dc52a5f99
/auxiliary-sets/IGVFDS3729YOSL/
IGVFDS3729YOSL
jay-shendure:dev_CRE_mEBs_repA_bulk_DNA_day6_reads
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
quantification DNA barcode sequencing
/labs/jay-shendure/
/measurement-sets/IGVFDS3958ZVDP/
/in-vitro-systems/IGVFSM8160AXXB/
released
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
d5fe9a66-c709-46ff-8d51-da3af4227314
/measurement-sets/IGVFDS9654ACTQ/
IGVFDS9654ACTQ
jay-shendure:dev_CRE_mEBs_repA_bulk_RNA_day16_reads
/assay-terms/OBI_0002675/
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
experimental data
/labs/jay-shendure/
MPRA
https://www.protocols.io/file/n92rb7r27.pdf
/in-vitro-systems/IGVFSM8231RSVA/
released
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
d545c14f-52a8-4d42-8d4c-cc7483eca046
/auxiliary-sets/IGVFDS7645MEIE/
IGVFDS7645MEIE
jay-shendure:dev_CRE_mEBs_mBC_rep2B_10Xlane2_reads
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
quantification DNA barcode sequencing
/labs/jay-shendure/
/measurement-sets/IGVFDS1598IBNK/
/in-vitro-systems/IGVFSM1855DKEJ/
released
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
d0c0a8e2-f613-4f7d-8448-97dcb49292b3
/measurement-sets/IGVFDS1500XNWW/
IGVFDS1500XNWW
jay-shendure:dev_CRE_mEBs_repA_bulk_RNA_day18_reads
/assay-terms/OBI_0002675/
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
experimental data
/labs/jay-shendure/
MPRA
https://www.protocols.io/file/n92rb7r27.pdf
/in-vitro-systems/IGVFSM1019NMFD/
released
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
d06c9bc1-8602-49f2-99ba-0dee0a8166e4
/measurement-sets/IGVFDS0953UCYV/
IGVFDS0953UCYV
jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_RNA_day20_reads
/assay-terms/OBI_0002675/
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
experimental data
/labs/jay-shendure/
MPRA
https://www.protocols.io/file/n92rb7r27.pdf
/in-vitro-systems/IGVFSM3017QZLW/
released
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
c83ecba3-f5b0-44da-9778-d9bb2e5348b5
/auxiliary-sets/IGVFDS9488YMYJ/
IGVFDS9488YMYJ
jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day8_reads
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
quantification DNA barcode sequencing
/labs/jay-shendure/
/measurement-sets/IGVFDS2172PVLM/
/in-vitro-systems/IGVFSM5166XVRM/
released
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
c82b88fa-7214-4b25-a4b8-1e28e9350a4b
/measurement-sets/IGVFDS7984TCLH/
IGVFDS7984TCLH
jay-shendure:dev_CRE_mEBs_GEx_repB_10Xlane2_reads
/assay-terms/OBI_0002675/
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
experimental data
/labs/jay-shendure/
MPRA (scQer)
https://www.protocols.io/file/n92rb7r27.pdf
/in-vitro-systems/IGVFSM4704LAYE/
released
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
c799915a-fbac-4e7b-90b2-0245c4a03852
/auxiliary-sets/IGVFDS4928ZASL/
IGVFDS4928ZASL
jay-shendure:dev_CRE_mEBs_repA_bulk_DNA_day18_reads
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
quantification DNA barcode sequencing
/labs/jay-shendure/
/measurement-sets/IGVFDS1500XNWW/
/in-vitro-systems/IGVFSM1019NMFD/
released
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
c75fc3d7-4222-42ec-a7d4-2116a5811275
/analysis-sets/IGVFDS7801YPEU/
IGVFDS7801YPEU
jay-shendure:analysis_set_scATAC_mEBs
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
principal analysis
/measurement-sets/IGVFDS1560LMQZ/
,
/measurement-sets/IGVFDS6675BDQA/
,
/measurement-sets/IGVFDS7446XPVQ/
,
/measurement-sets/IGVFDS0935XBYS/
/labs/jay-shendure/
https://www.protocols.io/file/n92rb7r27.pdf
/in-vitro-systems/IGVFSM9475FJUV/
,
/in-vitro-systems/IGVFSM6820XJKR/
,
/in-vitro-systems/IGVFSM7126ZMPT/
,
/in-vitro-systems/IGVFSM4284RDJK/
released
principal analysis of scATAC-seq data
Mus musculus
c69d7cb4-f432-4b38-b99c-7233b7d96af5
/measurement-sets/IGVFDS1048UDZS/
IGVFDS1048UDZS
jay-shendure:dev_CRE_mEBs_rep2B_part2_bulk_RNA_day18_reads
/assay-terms/OBI_0002675/
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
experimental data
/labs/jay-shendure/
MPRA
https://www.protocols.io/file/n92rb7r27.pdf
/in-vitro-systems/IGVFSM3379XAQN/
released
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
c5392564-d161-4699-9d61-29bafa313379