IGVF

gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci

Homo sapiens

d6a27c6b-d621-4087-8026-03e8c25dc7b3

/analysis-sets/IGVFDS4021XJLW/

IGVFDS4021XJLW

jay-shendure:analysis_set_CRISPRa_ipscNeurons

/awards/HG011966/

/human-donors/IGVFDO1756PPKO/

principal analysis

/measurement-sets/IGVFDS9384BVGM/, /measurement-sets/IGVFDS0272VVTX/, /measurement-sets/IGVFDS2385QENN/, /measurement-sets/IGVFDS2133JAFB/, /auxiliary-sets/IGVFDS8386FNRJ/, /auxiliary-sets/IGVFDS2220HHTN/, /auxiliary-sets/IGVFDS2532AVSC/, /auxiliary-sets/IGVFDS7598WPXV/

/labs/jay-shendure/

https://www.protocols.io/view/methods-from-multiplex-single-cell-crispra-screeni-c5zvy766

/in-vitro-systems/IGVFSM7750SNNY/, /in-vitro-systems/IGVFSM9913PXTT/, /in-vitro-systems/IGVFSM8317ZTFV/, /in-vitro-systems/IGVFSM8382KOXO/

released

principal analysis of scCRISPR screen data

Homo sapiens

c54949f6-6673-4a8e-a213-5cb972f23dea

/auxiliary-sets/IGVFDS8386FNRJ/

IGVFDS8386FNRJ

jay-shendure:CRISPRa_singlecell_iPSC-derived-neurons_VPH_10Xlane1_CS1

/awards/HG011966/

/human-donors/IGVFDO1756PPKO/

gRNA sequencing

/labs/jay-shendure/

/measurement-sets/IGVFDS9384BVGM/

/in-vitro-systems/IGVFSM7750SNNY/

released

gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci

Homo sapiens

ba54d793-6bd3-4793-b689-f1798ad3d759

/auxiliary-sets/IGVFDS4621HUKP/

IGVFDS4621HUKP

jay-shendure:CRISPRa_singlecell_K562_VPR_10Xlane1_CS1

/awards/HG011966/

/human-donors/IGVFDO9208RPQQ/

gRNA sequencing

/labs/jay-shendure/

/measurement-sets/IGVFDS7395DPAD/

/in-vitro-systems/IGVFSM1594ZOQH/

released

gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci

Homo sapiens

9a2a01ab-50e6-49d4-9f27-e9b6b6710896

/auxiliary-sets/IGVFDS7598WPXV/

IGVFDS7598WPXV

jay-shendure:CRISPRa_singlecell_iPSC-derived-neurons_VPH_10Xlane4_CS1

/awards/HG011966/

/human-donors/IGVFDO1756PPKO/

gRNA sequencing

/labs/jay-shendure/

/measurement-sets/IGVFDS2133JAFB/

/in-vitro-systems/IGVFSM8382KOXO/

released

gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci

Homo sapiens

822751be-5815-44d0-bc39-7982015a1260

/measurement-sets/IGVFDS2133JAFB/

IGVFDS2133JAFB

jay-shendure:CRISPRa_singlecell_iPSC-derived-neurons_VPH_10Xlane4_exprs

/assay-terms/OBI_0003660/

/awards/HG011966/

/human-donors/IGVFDO1756PPKO/

experimental data

/labs/jay-shendure/

scCRISPR screen

https://www.protocols.io/view/methods-from-multiplex-single-cell-crispra-screeni-c5zvy766

/in-vitro-systems/IGVFSM8382KOXO/

released

scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci

Homo sapiens

7ef1a019-1ec3-47a4-be6e-829b5076481d

/measurement-sets/IGVFDS7395DPAD/

IGVFDS7395DPAD

jay-shendure:CRISPRa_singlecell_K562_VPR_10Xlane1_exprs

/assay-terms/OBI_0003660/

/awards/HG011966/

/human-donors/IGVFDO9208RPQQ/

experimental data

/labs/jay-shendure/

scCRISPR screen

https://www.protocols.io/view/methods-from-multiplex-single-cell-crispra-screeni-c5zvy766

/in-vitro-systems/IGVFSM1594ZOQH/

released

scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci

Homo sapiens

7bb07c40-13cd-4806-b145-1e7006db88e2

/measurement-sets/IGVFDS9384BVGM/

IGVFDS9384BVGM

jay-shendure:CRISPRa_singlecell_iPSC-derived-neurons_VPH_10Xlane1_exprs

/assay-terms/OBI_0003660/

/awards/HG011966/

/human-donors/IGVFDO1756PPKO/

experimental data

/labs/jay-shendure/

scCRISPR screen

https://www.protocols.io/view/methods-from-multiplex-single-cell-crispra-screeni-c5zvy766

/in-vitro-systems/IGVFSM7750SNNY/

released

scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci

Homo sapiens

6eece0f5-d172-4615-ac08-40151c695c52

/auxiliary-sets/IGVFDS2220HHTN/

IGVFDS2220HHTN

jay-shendure:CRISPRa_singlecell_iPSC-derived-neurons_VPH_10Xlane2_CS1

/awards/HG011966/

/human-donors/IGVFDO1756PPKO/

gRNA sequencing

/labs/jay-shendure/

/measurement-sets/IGVFDS0272VVTX/

/in-vitro-systems/IGVFSM9913PXTT/

released

gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci

Homo sapiens

5cb44b8e-6570-45af-9bf6-4cdf9c01423c

/analysis-sets/IGVFDS9078ZWQH/

IGVFDS9078ZWQH

jay-shendure:analysis_set_CRISPRa_K562

/awards/HG011966/

/human-donors/IGVFDO9208RPQQ/

principal analysis

/measurement-sets/IGVFDS4863BMGZ/, /measurement-sets/IGVFDS8535CXVX/, /measurement-sets/IGVFDS7395DPAD/, /measurement-sets/IGVFDS0508ERUQ/, /auxiliary-sets/IGVFDS4502LQQH/, /auxiliary-sets/IGVFDS8929VNCP/, /auxiliary-sets/IGVFDS4621HUKP/, /auxiliary-sets/IGVFDS4834SKZS/

/labs/jay-shendure/

https://www.protocols.io/view/methods-from-multiplex-single-cell-crispra-screeni-c5zvy766

/in-vitro-systems/IGVFSM4521QSSO/, /in-vitro-systems/IGVFSM9390JSDH/, /in-vitro-systems/IGVFSM1594ZOQH/, /in-vitro-systems/IGVFSM9542NUGS/

released

principal analysis of scCRISPR screen data

Homo sapiens

5257dd49-492f-49b1-88fd-8b812ae8c188

/measurement-sets/IGVFDS4863BMGZ/

IGVFDS4863BMGZ

jay-shendure:CRISPRa_singlecell_K562_VP64_10Xlane1_exprs

/assay-terms/OBI_0003660/

/awards/HG011966/

/human-donors/IGVFDO9208RPQQ/

experimental data

/labs/jay-shendure/

scCRISPR screen

https://www.protocols.io/view/methods-from-multiplex-single-cell-crispra-screeni-c5zvy766

/in-vitro-systems/IGVFSM4521QSSO/

released

scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci

Homo sapiens

4b1872ed-da59-488b-ad5c-b5ff2a763a76

/auxiliary-sets/IGVFDS8929VNCP/

IGVFDS8929VNCP

jay-shendure:CRISPRa_singlecell_K562_VP64_10Xlane2_CS1

/awards/HG011966/

/human-donors/IGVFDO9208RPQQ/

gRNA sequencing

/labs/jay-shendure/

/measurement-sets/IGVFDS8535CXVX/

/in-vitro-systems/IGVFSM9390JSDH/

released

gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci

Homo sapiens

221867df-7fce-4848-bca9-314e60e2d26c

/auxiliary-sets/IGVFDS4834SKZS/

IGVFDS4834SKZS

jay-shendure:CRISPRa_singlecell_K562_VPR_10Xlane2_CS1

/awards/HG011966/

/human-donors/IGVFDO9208RPQQ/

gRNA sequencing

/labs/jay-shendure/

/measurement-sets/IGVFDS0508ERUQ/

/in-vitro-systems/IGVFSM9542NUGS/

released

gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci

Homo sapiens

20f51543-1cd9-43d7-95f2-f4e50179cab3

/construct-library-sets/IGVFDS7581DNXF/

IGVFDS7581DNXF

jay-shendure:construct_library_CRISPRa_Chardon-McDiarmid

/awards/HG011966/

guide library

/labs/jay-shendure/

loci

TF binding sites, candidate cis-regulatory elements

released

Guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci

1043a27b-01ca-4314-8312-be6ab2fa35c4

/auxiliary-sets/IGVFDS4502LQQH/

IGVFDS4502LQQH

jay-shendure:CRISPRa_singlecell_K562_VP64_10Xlane1_CS1

/awards/HG011966/

/human-donors/IGVFDO9208RPQQ/

gRNA sequencing

/labs/jay-shendure/

/measurement-sets/IGVFDS4863BMGZ/

/in-vitro-systems/IGVFSM4521QSSO/

released

gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci

Homo sapiens

0dc9ea2d-ca73-4152-ba67-3f2d3aedad75

/measurement-sets/IGVFDS0508ERUQ/

IGVFDS0508ERUQ

jay-shendure:CRISPRa_singlecell_K562_VPR_10Xlane2_exprs

/assay-terms/OBI_0003660/

/awards/HG011966/

/human-donors/IGVFDO9208RPQQ/

experimental data

/labs/jay-shendure/

scCRISPR screen

https://www.protocols.io/view/methods-from-multiplex-single-cell-crispra-screeni-c5zvy766

/in-vitro-systems/IGVFSM9542NUGS/

released

scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci

Homo sapiens

0ba1bffe-f4c4-4b58-bbee-170d5734d00d