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MeasurementSet
Measurement Set Details
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Assay
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in vitro CRISPR screen using single-cell RNA-seq
3
Preferred Assay Title
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Perturb-seq
3
Auxiliary Data
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None
gRNA sequencing
3
Construct Library Data
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guide library
3
Investigated Gene
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BACH2
3
BATF
3
BATF3
3
BHLHE40
3
CREM
3
DNMT1
3
EOMES
3
FLI1
3
FOXD2
3
FOXO1
3
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Sequencing Platform
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Illumina NovaSeq 6000
3
input_for
/analysis-sets/IGVFDS4011VZXE/
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Protocols
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UUID
/measurement-sets/IGVFDS1675WFHV/
IGVFDS1675WFHV
charles-gersbach:cd8-tcells-perturb-seq-crispra-gex-rep2
/assay-terms/OBI_0003660/
/awards/HG012053/
/human-donors/IGVFDO6082RNLT/
experimental data
/labs/charles-gersbach/
Perturb-seq
https://www.protocols.io/view/perturb-seq-characterizing-regulators-of-t-cell-fu-c5s9y6h6
,
https://www.protocols.io/view/crispra-tiling-screens-c5rfy53n
/primary-cells/IGVFSM6223YCQV/
released
CRISPR activation Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
Homo sapiens
cdfa906a-3c29-4d32-99d0-718d4f1a8314
/measurement-sets/IGVFDS6764PIJI/
IGVFDS6764PIJI
charles-gersbach:cd8-tcells-perturb-seq-crispra-gex-rep1
/assay-terms/OBI_0003660/
/awards/HG012053/
/human-donors/IGVFDO7605NZFO/
experimental data
/labs/charles-gersbach/
Perturb-seq
https://www.protocols.io/view/perturb-seq-characterizing-regulators-of-t-cell-fu-c5s9y6h6
,
https://www.protocols.io/view/crispra-tiling-screens-c5rfy53n
/primary-cells/IGVFSM8036VPRU/
released
CRISPR activation Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
Homo sapiens
c574903e-13e8-48c1-bf6d-1f387dafd55f
/measurement-sets/IGVFDS0238VKNF/
IGVFDS0238VKNF
charles-gersbach:cd8-tcells-perturb-seq-crispra-gex-rep3
/assay-terms/OBI_0003660/
/awards/HG012053/
/human-donors/IGVFDO4425KRAT/
experimental data
/labs/charles-gersbach/
Perturb-seq
https://www.protocols.io/view/perturb-seq-characterizing-regulators-of-t-cell-fu-c5s9y6h6
,
https://www.protocols.io/view/crispra-tiling-screens-c5rfy53n
/primary-cells/IGVFSM2105CLXS/
released
CRISPR activation Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes
Homo sapiens
aa6fe508-9993-458e-a2c0-a9068091bb55