audit_ntr_term_id

audit_item_status

audit_analysis_set_multiplexed_samples

Jesse Engreitz

Stanford Center for Connecting DNA Variants to Function and Phenotype

Quality-control workflow performed by Satpathy Lab - K562-CRISPRi, THP1, Jurkat, Jurkat + CD3/PMA, TeloHAEC-CRISPRi

Ansuman Satpathy, Stanford

K562, THP-1, Jurkat, TeloHAEC cell line and multiplexed sample, stimulated with treatment(s), modified with CRISPR modifications

multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples

Treatment of 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours

Treatment of 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours

10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix

Accession

Aliases

Alternate Accessions

Assay Term

Assemblies

Assessed Genes

Associated Phenotypes

Award

Description

Donors

Taxa

File Set Type

Measured Mechanism

Input File Sets

Measurement Sets

Model Name

Prediction Objects

Preferred Assay Title

Protocols

Sample Summary

Samples

Prediction Scope

Selection Criteria

Sequencing Library Types

Genes

Status

Summary

Assay Targeted Genes

Transcriptome Annotations

UUID

FileSet

File Set

Sample

Files

Provenance

Quality

Object Type

Classification

Modification

File Type

File Format

Audit Category: Internal Action

input_file_sets.@id

Assay

File Assembly

File Content Type

Report