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external data for catalog
8
Assemblies
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GRCh38
6
GRCm39
1
mm10
1
Taxa
All
None
Homo sapiens
6
Mus musculus
2
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ENCODE
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8 items
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File Set Type
Lab
Samples
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Summary
Taxa
Transcriptome Annotations
UUID
/curated-sets/IGVFDS5645BMIY/
IGVFDS5645BMIY
igvf:igvf_catalog_beta_v0.1_mouse_encode_ccre
GRCm39, mm10
/awards/ENCODE/
Mouse ENCODE cCRE
external data for catalog
/labs/encode/
released
Mus musculus GRCm39 mm10 external data for catalog
Mus musculus
eb9bad34-9bb4-4ab2-b3c6-da3ab10b6228
/curated-sets/IGVFDS8793NHEL/
IGVFDS8793NHEL
igvf:igvf_catalog_beta_v0.1_encode_mpra
GRCh38
/awards/ENCODE/
MPRA tested regulatory elements
external data for catalog
/labs/encode/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
db63a466-ff76-4688-ac06-7670178bf97f
/curated-sets/IGVFDS6815UTNH/
IGVFDS6815UTNH
igvf:igvf_catalog_beta_v0.1_mouse_human_element
/awards/ENCODE/
mouse-human element
external data for catalog
/labs/encode/
released
Mus musculus external data for catalog
Mus musculus
c01e5490-235a-4a4c-b704-286175b43e58
/curated-sets/IGVFDS1791VARB/
IGVFDS1791VARB
igvf:igvf_catalog_beta_v0.1_encode_e2g_hyper_hyper_edges_dnase_only
GRCh38
/awards/ENCODE/
Encode E2G hyper- and hyper-hyper- edges (ENCODE-E2G-DNaseOnly)
external data for catalog
/labs/encode/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
9c1ea23e-2d97-4748-b644-ad5047f5428b
/curated-sets/IGVFDS1922ZNEM/
IGVFDS1922ZNEM
igvf:igvf_catalog_beta_v0.1_caqtls
GRCh38
/awards/ENCODE/
caQTLs
external data for catalog
/labs/encode/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
77dd99ae-8bc5-48c7-b935-059ec4705394
/curated-sets/IGVFDS8501OFOY/
IGVFDS8501OFOY
igvf:igvf_catalog_beta_v0.1_encode_e2g_hyper_hyper_edges_e2g_full
GRCh38
/awards/ENCODE/
Encode E2G hyper- and hyper-hyper- edges (ENCODE-E2G-Full)
external data for catalog
/labs/encode/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
48d4acc1-4927-4671-be9d-53a84d653589
/curated-sets/IGVFDS5514HTXN/
IGVFDS5514HTXN
igvf:igvf_catalog_beta_v0.3_distal_regulation_combined_crispr_data
igvf:ENCSR998YDI
GRCh38
/awards/ENCODE/
Combined CRISPR dataset created from harmonizing data from Nasser et al., 2021, Gasperini et al., 2019 and Schraivogel et al., 2020
external data for catalog
/labs/encode/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
13e10485-bcf6-41b6-ad6a-09261a17af84
/curated-sets/IGVFDS9562WBTQ/
IGVFDS9562WBTQ
igvf:igvf_catalog_beta_v0.1_epiraction_enhancer_gene_links
GRCh38
/awards/ENCODE/
Epiraction enhancer gene links
external data for catalog
/labs/encode/
released
Homo sapiens GRCh38 external data for catalog
Homo sapiens
120d482f-a20c-4dfa-a091-4ba87b3e7eef