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IMR-90 — IGVFSM3125MLLP

released
Summary
multiplexed sample: Homo sapiens (female) IMR-90 cell line; Homo sapiens (female) MCF-7 cell line; ... and 17 more samples
Multiplexing Method
barcode based
Sources
Cellular Sub Pool
4
Barcode Map
IGVFFI8343LJPE
Taxa
Homo sapiens
Aliases
ansuman-satpathy:multiplexed_sample_igvf18_10x4
Protocols
Attribution
Ansuman Satpathy, Stanford

Donors

6 items
Aliases
  • igvf:donor_of_HCT116
male
Homo sapiens
  • igvf:donor_of_HUDEP-2
unspecified
Homo sapiens
  • igvf:donor_of_teloHAEC
female
Homo sapiens
  • igvf:donor_of_IMR90
female
Homo sapiens
  • igvf:donor_of_MCF7
female
Homo sapiens
  • igvf:donor_of_SKNSH
female
Homo sapiens

File Sets

4 items
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
  • ansuman-satpathy:snRNA-seq_igvf18_10x4
Ansuman Satpathy, Stanford
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:multiseq_igvf18_10x4
Ansuman Satpathy, Stanford
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
  • ansuman-satpathy:igvf18_analysis_set_10x4
Ansuman Satpathy, Stanford
single-nucleus ATAC-seq (10x multiome with MULTI-seq)
  • ansuman-satpathy:snATAC-seq_igvf18_10x4
Ansuman Satpathy, Stanford

Multiplexed Samples

19 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) IMR-90 cell line
InVitroSystem
Homo sapiens (female) MCF-7 cell line
InVitroSystem
Homo sapiens (female) TeloHAEC cell line treated with 3 μM Yoda1 for 4 hours
InVitroSystem
Homo sapiens HUDEP-2 differentiated cell specimen induced to erythrocyte for 14 days
InVitroSystem
Homo sapiens (male) HCT116 cell line
InVitroSystem
Homo sapiens HUDEP-2 differentiated cell specimen induced to erythrocyte for 7 days
InVitroSystem
Homo sapiens (female) SK-N-SH cell line
InVitroSystem
Homo sapiens (female) SK-N-SH cell line
InVitroSystem
Homo sapiens (female) TeloHAEC cell line treated with 3 μM Yoda1 for 4 hours
InVitroSystem
Homo sapiens (male) HCT116 cell line

Institutional Certificates

1 item
Certificate Identifier
Data Use Limitation
Lab
No limitations