{
"@context": "/terms/",
"@id": "/multiplexed-samples/IGVFSM3125MLLP/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM3125MLLP",
"aliases": [
"ansuman-satpathy:multiplexed_sample_igvf18_10x4"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "NTR term ID",
"detail": "Sample term for [NTR_0000753](/sample-terms/NTR_0000753/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_ntr_term_id",
"path": "/sample-terms/NTR_0000753/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map": "/tabular-files/IGVFFI8343LJPE/",
"biomarkers": [],
"cellular_sub_pool": "4",
"classifications": [
"cell line",
"differentiated cell specimen",
"multiplexed sample"
],
"creation_timestamp": "2025-01-27T22:54:50.229008+00:00",
"disease_terms": [],
"donors": [
{
"@id": "/human-donors/IGVFDO0384OZRW/",
"accession": "IGVFDO0384OZRW",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO0965QSBA/",
"accession": "IGVFDO0965QSBA",
"ethnicities": [
"Japanese"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO3459DFTW/",
"accession": "IGVFDO3459DFTW",
"status": "released"
},
{
"@id": "/human-donors/IGVFDO4200NZSV/",
"accession": "IGVFDO4200NZSV",
"ethnicities": [
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO7503RZHO/",
"accession": "IGVFDO7503RZHO",
"ethnicities": [
"European"
],
"status": "released"
},
{
"@id": "/human-donors/IGVFDO9018OPIO/",
"accession": "IGVFDO9018OPIO",
"status": "released"
}
],
"file_sets": [
{
"@id": "/measurement-sets/IGVFDS4170WANT/",
"accession": "IGVFDS4170WANT",
"aliases": [
"ansuman-satpathy:snRNA-seq_igvf18_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
{
"@id": "/auxiliary-sets/IGVFDS6039YTCL/",
"accession": "IGVFDS6039YTCL",
"aliases": [
"ansuman-satpathy:multiseq_igvf18_10x4"
],
"file_set_type": "lipid-conjugated oligo sequencing",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/measurement-sets/IGVFDS9305YTYU/",
"accession": "IGVFDS9305YTYU",
"aliases": [
"ansuman-satpathy:snATAC-seq_igvf18_10x4"
],
"file_set_type": "experimental data",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"preferred_assay_title": "10x multiome with MULTI-seq",
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
{
"@id": "/analysis-sets/IGVFDS4963SRAJ/",
"accession": "IGVFDS4963SRAJ",
"aliases": [
"ansuman-satpathy:igvf18_analysis_set"
],
"file_set_type": "intermediate analysis",
"lab": {
"title": "Ansuman Satpathy, Stanford"
},
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
}
],
"institutional_certificates": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"modifications": [],
"multiplexed_in": [],
"multiplexed_samples": [
{
"@id": "/in-vitro-systems/IGVFSM9558DHKX/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9558DHKX",
"donors": [
{
"@id": "/human-donors/IGVFDO3459DFTW/",
"accession": "IGVFDO3459DFTW",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7764FVUA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7764FVUA",
"donors": [
{
"@id": "/human-donors/IGVFDO3459DFTW/",
"accession": "IGVFDO3459DFTW",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1534MDDV/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1534MDDV",
"donors": [
{
"@id": "/human-donors/IGVFDO3459DFTW/",
"accession": "IGVFDO3459DFTW",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens treated with 3 μM Yoda1 for 4 hours"
},
{
"@id": "/in-vitro-systems/IGVFSM6432BZOX/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6432BZOX",
"donors": [
{
"@id": "/human-donors/IGVFDO3459DFTW/",
"accession": "IGVFDO3459DFTW",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens treated with 3 μM Yoda1 for 4 hours"
},
{
"@id": "/in-vitro-systems/IGVFSM1771MKNB/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1771MKNB",
"donors": [
{
"@id": "/human-donors/IGVFDO0965QSBA/",
"accession": "IGVFDO0965QSBA",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0022838/",
"status": "released",
"term_name": "HUDEP-2"
}
],
"status": "released",
"summary": "HUDEP-2 differentiated cell specimen induced to erythrocyte for 14 days, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM8737UEZA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8737UEZA",
"donors": [
{
"@id": "/human-donors/IGVFDO0965QSBA/",
"accession": "IGVFDO0965QSBA",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0022838/",
"status": "released",
"term_name": "HUDEP-2"
}
],
"status": "released",
"summary": "HUDEP-2 differentiated cell specimen induced to erythrocyte for 14 days, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM8332LYQZ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8332LYQZ",
"donors": [
{
"@id": "/human-donors/IGVFDO0965QSBA/",
"accession": "IGVFDO0965QSBA",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0022838/",
"status": "released",
"term_name": "HUDEP-2"
}
],
"status": "released",
"summary": "HUDEP-2 differentiated cell specimen induced to erythrocyte for 7 days, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3772AARV/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3772AARV",
"donors": [
{
"@id": "/human-donors/IGVFDO0965QSBA/",
"accession": "IGVFDO0965QSBA",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0022838/",
"status": "released",
"term_name": "HUDEP-2"
}
],
"status": "released",
"summary": "HUDEP-2 differentiated cell specimen induced to erythrocyte for 7 days, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9969CPTK/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9969CPTK",
"donors": [
{
"@id": "/human-donors/IGVFDO0384OZRW/",
"accession": "IGVFDO0384OZRW",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"status": "released",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1839FCFT/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1839FCFT",
"donors": [
{
"@id": "/human-donors/IGVFDO0384OZRW/",
"accession": "IGVFDO0384OZRW",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"status": "released",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6920AEIX/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6920AEIX",
"donors": [
{
"@id": "/human-donors/IGVFDO0384OZRW/",
"accession": "IGVFDO0384OZRW",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"status": "released",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM8404EKXH/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8404EKXH",
"donors": [
{
"@id": "/human-donors/IGVFDO7503RZHO/",
"accession": "IGVFDO7503RZHO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001203/",
"status": "released",
"term_name": "MCF-7"
}
],
"status": "released",
"summary": "MCF-7 cell line, female, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7026LUVK/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7026LUVK",
"donors": [
{
"@id": "/human-donors/IGVFDO7503RZHO/",
"accession": "IGVFDO7503RZHO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001203/",
"status": "released",
"term_name": "MCF-7"
}
],
"status": "released",
"summary": "MCF-7 cell line, female, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1269ANTZ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1269ANTZ",
"donors": [
{
"@id": "/human-donors/IGVFDO7503RZHO/",
"accession": "IGVFDO7503RZHO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001203/",
"status": "released",
"term_name": "MCF-7"
}
],
"status": "released",
"summary": "MCF-7 cell line, female, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5808PBXT/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5808PBXT",
"donors": [
{
"@id": "/human-donors/IGVFDO9018OPIO/",
"accession": "IGVFDO9018OPIO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003072/",
"status": "released",
"term_name": "SK-N-SH"
}
],
"status": "released",
"summary": "SK-N-SH cell line, female, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3799BTFA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3799BTFA",
"donors": [
{
"@id": "/human-donors/IGVFDO9018OPIO/",
"accession": "IGVFDO9018OPIO",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003072/",
"status": "released",
"term_name": "SK-N-SH"
}
],
"status": "released",
"summary": "SK-N-SH cell line, female, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0805XOHS/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0805XOHS",
"donors": [
{
"@id": "/human-donors/IGVFDO4200NZSV/",
"accession": "IGVFDO4200NZSV",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001196/",
"status": "released",
"term_name": "IMR-90"
}
],
"status": "released",
"summary": "IMR-90 cell line, female, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7300ABNM/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7300ABNM",
"donors": [
{
"@id": "/human-donors/IGVFDO4200NZSV/",
"accession": "IGVFDO4200NZSV",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001196/",
"status": "released",
"term_name": "IMR-90"
}
],
"status": "released",
"summary": "IMR-90 cell line, female, Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9180DDOA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9180DDOA",
"donors": [
{
"@id": "/human-donors/IGVFDO4200NZSV/",
"accession": "IGVFDO4200NZSV",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001196/",
"status": "released",
"term_name": "IMR-90"
}
],
"status": "released",
"summary": "IMR-90 cell line, female, Homo sapiens"
}
],
"multiplexing_methods": [
"barcode based"
],
"origin_of": [],
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"release_timestamp": "2025-03-07T01:18:09.241039+00:00",
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001196/",
"status": "released",
"term_name": "IMR-90"
},
{
"@id": "/sample-terms/EFO_0001203/",
"status": "released",
"term_name": "MCF-7"
},
{
"@id": "/sample-terms/EFO_0002824/",
"status": "released",
"term_name": "HCT116"
},
{
"@id": "/sample-terms/EFO_0003072/",
"status": "released",
"term_name": "SK-N-SH"
},
{
"@id": "/sample-terms/EFO_0022838/",
"status": "released",
"term_name": "HUDEP-2"
},
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"schema_version": "10",
"sorted_fractions": [],
"sources": [
{
"@id": "/labs/daniel-bauer/",
"status": "current",
"title": "Daniel Bauer, HSCI"
},
{
"@id": "/labs/guillaume-lettre/",
"status": "current",
"title": "Guillaume Lettre, MHI"
},
{
"@id": "/labs/jesse-engreitz/",
"status": "current",
"title": "Jesse Engreitz, Stanford"
}
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"summary": "multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples",
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/ff03c6ff-c1f5-4b47-bd9d-62f22d5794c5/",
"depletion": false,
"purpose": "perturbation",
"status": "in progress",
"treatment_term_name": "Yoda1",
"treatment_type": "chemical"
}
],
"uuid": "8fe07cde-e97a-46c6-b42e-d0429af459ea",
"virtual": false
}