{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS9953SGYZ/",
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"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS9953SGYZ",
"aliases": [
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],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"assay_slims": [
"chromatin accessibility"
],
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS9953SGYZ](/measurement-sets/IGVFDS9953SGYZ/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS9953SGYZ/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS9953SGYZ](/measurement-sets/IGVFDS9953SGYZ/) has in progress subobject tabular file [IGVFFI5875LDWP](/tabular-files/IGVFFI5875LDWP/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS9953SGYZ/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS9953SGYZ](/measurement-sets/IGVFDS9953SGYZ/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS9953SGYZ/"
},
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM1399KNRB](/in-vitro-systems/IGVFSM1399KNRB/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM1399KNRB/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS9953SGYZ](/measurement-sets/IGVFDS9953SGYZ/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS9953SGYZ/"
}
]
},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping",
"contact_pi": {
"@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
"control_for": [],
"controlled_access": true,
"creation_timestamp": "2024-08-20T14:58:54.731288+00:00",
"data_use_limitation_summaries": [
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],
"donors": [
{
"@id": "/human-donors/IGVFDO4689NFPC/",
"accession": "IGVFDO4689NFPC",
"aliases": [
"buenrostro-bernstein:Donor 1770"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3937NOVL/",
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9942ECYN/",
"accession": "IGVFDO9942ECYN",
"aliases": [
"buenrostro-bernstein:Donor 1742"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0233FJJF/",
"accession": "IGVFDO0233FJJF",
"aliases": [
"buenrostro-bernstein:Donor 1834"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0875HNRV/",
"accession": "IGVFDO0875HNRV",
"aliases": [
"buenrostro-bernstein:Donor 1895"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2044WGSW/",
"accession": "IGVFDO2044WGSW",
"aliases": [
"buenrostro-bernstein:Donor 1856"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1318DUVG/",
"accession": "IGVFDO1318DUVG",
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2131TKFT/",
"accession": "IGVFDO2131TKFT",
"aliases": [
"buenrostro-bernstein:Donor 1811"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7956CWXZ/",
"accession": "IGVFDO7956CWXZ",
"aliases": [
"buenrostro-bernstein:Donor 1821"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1906JPPE/",
"accession": "IGVFDO1906JPPE",
"aliases": [
"buenrostro-bernstein:Donor 1893"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2343ZVKW/",
"accession": "IGVFDO2343ZVKW",
"aliases": [
"buenrostro-bernstein:Donor 1869"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6837BSOS/",
"accession": "IGVFDO6837BSOS",
"aliases": [
"buenrostro-bernstein:Donor 1812"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2142TSPQ/",
"accession": "IGVFDO2142TSPQ",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9594EWNE/",
"accession": "IGVFDO9594EWNE",
"aliases": [
"buenrostro-bernstein:Donor 1878"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5446TLJJ/",
"accession": "IGVFDO5446TLJJ",
"aliases": [
"buenrostro-bernstein:Donor 1894"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0143YSWQ/",
"accession": "IGVFDO0143YSWQ",
"aliases": [
"buenrostro-bernstein:Donor 1860"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6316KUFG/",
"accession": "IGVFDO6316KUFG",
"aliases": [
"buenrostro-bernstein:Donor 1871"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1429GCHH/",
"accession": "IGVFDO1429GCHH",
"aliases": [
"buenrostro-bernstein:Donor 1810"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0527HIIJ/",
"accession": "IGVFDO0527HIIJ",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6180JBWH/",
"accession": "IGVFDO6180JBWH",
"aliases": [
"buenrostro-bernstein:Donor 1855"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0452ROLO/",
"accession": "IGVFDO0452ROLO",
"aliases": [
"buenrostro-bernstein:Donor 1867"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4141QBHD/",
"accession": "IGVFDO4141QBHD",
"aliases": [
"buenrostro-bernstein:Donor 1883"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6553AADC/",
"accession": "IGVFDO6553AADC",
"aliases": [
"buenrostro-bernstein:Donor 1841"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0436YOXD/",
"accession": "IGVFDO0436YOXD",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6295KHUE/",
"accession": "IGVFDO6295KHUE",
"aliases": [
"buenrostro-bernstein:Donor 1863"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7817ENDD/",
"accession": "IGVFDO7817ENDD",
"aliases": [
"buenrostro-bernstein:Donor 1877"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5748WCDL/",
"accession": "IGVFDO5748WCDL",
"aliases": [
"buenrostro-bernstein:Donor 1889"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0166JLWT/",
"accession": "IGVFDO0166JLWT",
"aliases": [
"buenrostro-bernstein:Donor 1816"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9707NUOC/",
"accession": "IGVFDO9707NUOC",
"aliases": [
"buenrostro-bernstein:Donor 1859"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1656HYLL/",
"accession": "IGVFDO1656HYLL",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5342CGKC/",
"accession": "IGVFDO5342CGKC",
"aliases": [
"buenrostro-bernstein:Donor 1882"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0273LMQQ/",
"accession": "IGVFDO0273LMQQ",
"aliases": [
"buenrostro-bernstein:Donor 1876"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0674VHCY/",
"accession": "IGVFDO0674VHCY",
"aliases": [
"buenrostro-bernstein:Donor 1896"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3364ORGK/",
"accession": "IGVFDO3364ORGK",
"aliases": [
"buenrostro-bernstein:Donor 1897"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7983CLUG/",
"accession": "IGVFDO7983CLUG",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7476FWEA/",
"accession": "IGVFDO7476FWEA",
"aliases": [
"buenrostro-bernstein:Donor 1851"
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5333XVCI/",
"accession": "IGVFDO5333XVCI",
"aliases": [
"buenrostro-bernstein:Donor 1818"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6328ESSA/",
"accession": "IGVFDO6328ESSA",
"aliases": [
"buenrostro-bernstein:Donor 1768"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0392YIJG/",
"accession": "IGVFDO0392YIJG",
"aliases": [
"buenrostro-bernstein:Donor 1892"
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5257YVJL/",
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"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0995XOJH/",
"accession": "IGVFDO0995XOJH",
"aliases": [
"buenrostro-bernstein:Donor 1872"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5895ABMM/",
"accession": "IGVFDO5895ABMM",
"aliases": [
"buenrostro-bernstein:Donor 1824"
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7542OMCX/",
"accession": "IGVFDO7542OMCX",
"aliases": [
"buenrostro-bernstein:Donor 1819"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5829IPZL/",
"accession": "IGVFDO5829IPZL",
"aliases": [
"buenrostro-bernstein:Donor 1772"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9737GFZX/",
"accession": "IGVFDO9737GFZX",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1778GJAD/",
"accession": "IGVFDO1778GJAD",
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7567RWAK/",
"accession": "IGVFDO7567RWAK",
"aliases": [
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6556DSRS/",
"accession": "IGVFDO6556DSRS",
"aliases": [
"buenrostro-bernstein:Donor 1848"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3773GAHC/",
"accession": "IGVFDO3773GAHC",
"aliases": [
"buenrostro-bernstein:Donor 1817"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0597VIVH/",
"accession": "IGVFDO0597VIVH",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3469EFJR/",
"accession": "IGVFDO3469EFJR",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4197GLLD/",
"accession": "IGVFDO4197GLLD",
"aliases": [
"buenrostro-bernstein:Donor 1866"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6704FGWL/",
"accession": "IGVFDO6704FGWL",
"aliases": [
"buenrostro-bernstein:Donor 1875"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2628QOSP/",
"accession": "IGVFDO2628QOSP",
"aliases": [
"buenrostro-bernstein:Donor 1830"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0144AKUR/",
"accession": "IGVFDO0144AKUR",
"aliases": [
"buenrostro-bernstein:Donor 1850"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8979DYIF/",
"accession": "IGVFDO8979DYIF",
"aliases": [
"buenrostro-bernstein:Donor 1743"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1215CYXN/",
"accession": "IGVFDO1215CYXN",
"aliases": [
"buenrostro-bernstein:Donor 1843"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8250RHCQ/",
"accession": "IGVFDO8250RHCQ",
"aliases": [
"buenrostro-bernstein:Donor 1854"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2028ZXZQ/",
"accession": "IGVFDO2028ZXZQ",
"aliases": [
"buenrostro-bernstein:Donor 1820"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2664ZLXL/",
"accession": "IGVFDO2664ZLXL",
"aliases": [
"buenrostro-bernstein:Donor 1891"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2015BBZM/",
"accession": "IGVFDO2015BBZM",
"aliases": [
"buenrostro-bernstein:Donor 1813"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2372UULO/",
"accession": "IGVFDO2372UULO",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9301UFXR/",
"accession": "IGVFDO9301UFXR",
"aliases": [
"buenrostro-bernstein:Donor 1815"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6720KIII/",
"accession": "IGVFDO6720KIII",
"aliases": [
"buenrostro-bernstein:Donor 1868"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2298PENP/",
"accession": "IGVFDO2298PENP",
"aliases": [
"buenrostro-bernstein:Donor 1879"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6890GKJS/",
"accession": "IGVFDO6890GKJS",
"aliases": [
"buenrostro-bernstein:Donor 1836"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7440MWLG/",
"accession": "IGVFDO7440MWLG",
"aliases": [
"buenrostro-bernstein:Donor 1846"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5074GHND/",
"accession": "IGVFDO5074GHND",
"aliases": [
"buenrostro-bernstein:Donor 1890"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0455AULY/",
"accession": "IGVFDO0455AULY",
"aliases": [
"buenrostro-bernstein:Donor 1814"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8532BOID/",
"accession": "IGVFDO8532BOID",
"aliases": [
"buenrostro-bernstein:Donor 1823"
],
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{
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],
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{
"@id": "/sample-terms/EFO_0004905/",
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"Item"
],
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"summary": "induced pluripotent stem cell",
"term_name": "induced pluripotent stem cell"
}
],
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"summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 177)",
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"term_name": "endodermal cell"
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"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-08-20T15:15:34.760503+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "e9197096-e7ed-4018-bebf-3b5d2d881d5e"
}