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IGVFDS9935CBEP

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 63 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 8 more samples
Protocols
Aliases
igvf:corces_measurementSet_X049_G8_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
I1
1
223HC3LT3
6
475 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223HC3LT3
8
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223HC3LT3
5
470 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223HC3LT3
5
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
223HC3LT3
7
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
223HC3LT3
5
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
223HC3LT3
8
480 MB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Barcode index
223HC3LT3
5
1.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R3
1
Read 2
223HC3LT3
6
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R1
1
Read 1
223HC3LT3
6
2.0 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 63 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 8 more samples

Donors

10 items
Aliases
  • igvf:corces_donor_BANN1851
male
Homo sapiens
  • igvf:corces_donor_BANN1340
male
Homo sapiens
  • igvf:corces_donor_BANN0950
male
Homo sapiens
  • igvf:corces_donor_BANN1902
male
Homo sapiens
  • igvf:corces_donor_BANN0322
female
Homo sapiens
  • igvf:corces_donor_BANN1070
male
Homo sapiens
  • igvf:corces_donor_BANN1234
male
Homo sapiens
  • igvf:corces_donor_BANN0874
female
Homo sapiens
  • igvf:corces_donor_BANN0701
male
Homo sapiens
  • igvf:corces_donor_BANN2003
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • igvf:corces_measurementSet_X049_G8_RNA
Ryan Corces, Gladstone Institute UCSF