{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS9901CQZL/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS9901CQZL",
"aliases": [
"igvf:corces_measurementSet_RP033_G6_RNA"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1464XWYC](/human-donors/IGVFDO1464XWYC/) has in progress subobject phenotypic feature [b7673a14-200c-4d11-99af-42748f5f2b5a](/phenotypic-features/b7673a14-200c-4d11-99af-42748f5f2b5a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1464XWYC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1464XWYC](/human-donors/IGVFDO1464XWYC/) has in progress subobject phenotypic feature [150696e6-cb05-4577-bfa3-59c11882d502](/phenotypic-features/150696e6-cb05-4577-bfa3-59c11882d502/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1464XWYC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1464XWYC](/human-donors/IGVFDO1464XWYC/) has in progress subobject phenotypic feature [0944c07c-192b-4750-9fa2-98e9d416951d](/phenotypic-features/0944c07c-192b-4750-9fa2-98e9d416951d/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1464XWYC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1464XWYC](/human-donors/IGVFDO1464XWYC/) has in progress subobject phenotypic feature [5966062a-b342-4b70-9aa9-9db9c46d5bb3](/phenotypic-features/5966062a-b342-4b70-9aa9-9db9c46d5bb3/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1464XWYC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1464XWYC](/human-donors/IGVFDO1464XWYC/) has in progress subobject phenotypic feature [2853f35c-e0bb-40d8-8f0a-6d998a7db51a](/phenotypic-features/2853f35c-e0bb-40d8-8f0a-6d998a7db51a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1464XWYC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0112XZXT](/human-donors/IGVFDO0112XZXT/) has in progress subobject phenotypic feature [3e9cf626-9ed1-49cb-a08d-99e7e9d01e03](/phenotypic-features/3e9cf626-9ed1-49cb-a08d-99e7e9d01e03/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0112XZXT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0112XZXT](/human-donors/IGVFDO0112XZXT/) has in progress subobject phenotypic feature [d8974890-5de1-43a0-bbdd-662642652835](/phenotypic-features/d8974890-5de1-43a0-bbdd-662642652835/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0112XZXT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0112XZXT](/human-donors/IGVFDO0112XZXT/) has in progress subobject phenotypic feature [f47cb079-e39d-44ed-aa9b-ae76dd89e912](/phenotypic-features/f47cb079-e39d-44ed-aa9b-ae76dd89e912/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0112XZXT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0112XZXT](/human-donors/IGVFDO0112XZXT/) has in progress subobject phenotypic feature [f3293daa-5b2a-482d-b783-e74292e01215](/phenotypic-features/f3293daa-5b2a-482d-b783-e74292e01215/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0112XZXT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0112XZXT](/human-donors/IGVFDO0112XZXT/) has in progress subobject phenotypic feature [5bbb08a5-85e9-4c47-b3a0-47e8c124020a](/phenotypic-features/5bbb08a5-85e9-4c47-b3a0-47e8c124020a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0112XZXT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0112XZXT](/human-donors/IGVFDO0112XZXT/) has in progress subobject phenotypic feature [c1af321e-187f-465d-82c2-7f3167821d82](/phenotypic-features/c1af321e-187f-465d-82c2-7f3167821d82/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0112XZXT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [e6ce9dcf-358f-4bfa-88fe-80aa93093ef6](/phenotypic-features/e6ce9dcf-358f-4bfa-88fe-80aa93093ef6/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [2d965f3b-4869-4a71-96f5-9b35c25cd94a](/phenotypic-features/2d965f3b-4869-4a71-96f5-9b35c25cd94a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [fc0c92f4-96a4-4665-bf46-bf345a1cb081](/phenotypic-features/fc0c92f4-96a4-4665-bf46-bf345a1cb081/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [f869ce97-cce9-4af8-8c36-07e368584a17](/phenotypic-features/f869ce97-cce9-4af8-8c36-07e368584a17/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [6ea3add1-256e-497d-b2ed-6440e1b9c61d](/phenotypic-features/6ea3add1-256e-497d-b2ed-6440e1b9c61d/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [d78f4b48-7bfb-40b4-a5a7-4e2207d7a43b](/phenotypic-features/d78f4b48-7bfb-40b4-a5a7-4e2207d7a43b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3971UIZC](/human-donors/IGVFDO3971UIZC/) has in progress subobject phenotypic feature [22131022-5110-4ae2-91a6-98c3dcc35ee0](/phenotypic-features/22131022-5110-4ae2-91a6-98c3dcc35ee0/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3971UIZC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3971UIZC](/human-donors/IGVFDO3971UIZC/) has in progress subobject phenotypic feature [30a806f6-8eeb-410a-a2db-f5b64f11b294](/phenotypic-features/30a806f6-8eeb-410a-a2db-f5b64f11b294/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3971UIZC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3971UIZC](/human-donors/IGVFDO3971UIZC/) has in progress subobject phenotypic feature [8e88e2ab-61fc-482b-a4b5-416755a847bc](/phenotypic-features/8e88e2ab-61fc-482b-a4b5-416755a847bc/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3971UIZC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3971UIZC](/human-donors/IGVFDO3971UIZC/) has in progress subobject phenotypic feature [e4feb5fc-ff23-4699-a4d2-620d59dcdd3e](/phenotypic-features/e4feb5fc-ff23-4699-a4d2-620d59dcdd3e/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3971UIZC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO3971UIZC](/human-donors/IGVFDO3971UIZC/) has in progress subobject phenotypic feature [f57d3e32-48bd-4719-8d01-68046dd4734c](/phenotypic-features/f57d3e32-48bd-4719-8d01-68046dd4734c/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO3971UIZC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0909BNTN](/human-donors/IGVFDO0909BNTN/) has in progress subobject phenotypic feature [b9ba6294-fa01-45db-a342-02c340c406aa](/phenotypic-features/b9ba6294-fa01-45db-a342-02c340c406aa/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0909BNTN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0909BNTN](/human-donors/IGVFDO0909BNTN/) has in progress subobject phenotypic feature [c827a4f6-432a-47ae-b18e-8c721e6d42e4](/phenotypic-features/c827a4f6-432a-47ae-b18e-8c721e6d42e4/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0909BNTN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0909BNTN](/human-donors/IGVFDO0909BNTN/) has in progress subobject phenotypic feature [4da949c2-0863-4050-b35b-651746079c71](/phenotypic-features/4da949c2-0863-4050-b35b-651746079c71/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0909BNTN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0909BNTN](/human-donors/IGVFDO0909BNTN/) has in progress subobject phenotypic feature [3295642e-7253-4693-922a-185ebc68252c](/phenotypic-features/3295642e-7253-4693-922a-185ebc68252c/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0909BNTN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0909BNTN](/human-donors/IGVFDO0909BNTN/) has in progress subobject phenotypic feature [18bd0e6a-eaaa-4747-9487-a3a7612a9df7](/phenotypic-features/18bd0e6a-eaaa-4747-9487-a3a7612a9df7/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0909BNTN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO0909BNTN](/human-donors/IGVFDO0909BNTN/) has in progress subobject phenotypic feature [5cbf3905-6bd7-466b-b24d-ef7e96305b2e](/phenotypic-features/5cbf3905-6bd7-466b-b24d-ef7e96305b2e/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO0909BNTN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [956b5474-2acd-4c13-bbc1-dd81dba0622a](/phenotypic-features/956b5474-2acd-4c13-bbc1-dd81dba0622a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4108VCBA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [aff60c46-5191-4203-ac06-8623d7e676fa](/phenotypic-features/aff60c46-5191-4203-ac06-8623d7e676fa/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4108VCBA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [7a3d9384-554b-480b-b1f3-41a99dd54465](/phenotypic-features/7a3d9384-554b-480b-b1f3-41a99dd54465/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4108VCBA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [f32d310f-3150-421e-9656-a5fbaf04eebd](/phenotypic-features/f32d310f-3150-421e-9656-a5fbaf04eebd/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4108VCBA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [1bb96444-071d-4a8d-81ef-b6567ef83275](/phenotypic-features/1bb96444-071d-4a8d-81ef-b6567ef83275/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4108VCBA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO4108VCBA](/human-donors/IGVFDO4108VCBA/) has in progress subobject phenotypic feature [d2909f2d-5e28-4e1f-859d-c562f1c883af](/phenotypic-features/d2909f2d-5e28-4e1f-859d-c562f1c883af/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO4108VCBA/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO2028IGVN](/human-donors/IGVFDO2028IGVN/) has in progress subobject phenotypic feature [03671afd-a812-4641-acd8-ab7ca518f1a5](/phenotypic-features/03671afd-a812-4641-acd8-ab7ca518f1a5/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO2028IGVN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO2028IGVN](/human-donors/IGVFDO2028IGVN/) has in progress subobject phenotypic feature [a44604d0-0960-4f7f-a9a4-8399f31bfe01](/phenotypic-features/a44604d0-0960-4f7f-a9a4-8399f31bfe01/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO2028IGVN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO2028IGVN](/human-donors/IGVFDO2028IGVN/) has in progress subobject phenotypic feature [07bba92c-e0e2-4492-9c8e-07b2afc7b700](/phenotypic-features/07bba92c-e0e2-4492-9c8e-07b2afc7b700/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO2028IGVN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO2028IGVN](/human-donors/IGVFDO2028IGVN/) has in progress subobject phenotypic feature [18771fd8-b1f4-4112-ac0d-363d231fec46](/phenotypic-features/18771fd8-b1f4-4112-ac0d-363d231fec46/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO2028IGVN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO2028IGVN](/human-donors/IGVFDO2028IGVN/) has in progress subobject phenotypic feature [f38ae152-a841-4578-80ad-e603838eb149](/phenotypic-features/f38ae152-a841-4578-80ad-e603838eb149/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO2028IGVN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO2028IGVN](/human-donors/IGVFDO2028IGVN/) has in progress subobject phenotypic feature [b6e61b30-fc06-4574-bff5-d55b926cf9f3](/phenotypic-features/b6e61b30-fc06-4574-bff5-d55b926cf9f3/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO2028IGVN/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1469WVVS](/human-donors/IGVFDO1469WVVS/) has in progress subobject phenotypic feature [66e32efb-7f85-4402-a04c-fece8128ee8e](/phenotypic-features/66e32efb-7f85-4402-a04c-fece8128ee8e/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1469WVVS/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1469WVVS](/human-donors/IGVFDO1469WVVS/) has in progress subobject phenotypic feature [0cd59ebe-1db1-4f78-94b0-874fcf8fe239](/phenotypic-features/0cd59ebe-1db1-4f78-94b0-874fcf8fe239/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1469WVVS/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1469WVVS](/human-donors/IGVFDO1469WVVS/) has in progress subobject phenotypic feature [fd6110d1-a29e-4225-a5e6-27a7614bcdd7](/phenotypic-features/fd6110d1-a29e-4225-a5e6-27a7614bcdd7/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1469WVVS/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1469WVVS](/human-donors/IGVFDO1469WVVS/) has in progress subobject phenotypic feature [a945aea6-1bca-4a51-a030-e44b27e81d2a](/phenotypic-features/a945aea6-1bca-4a51-a030-e44b27e81d2a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1469WVVS/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1469WVVS](/human-donors/IGVFDO1469WVVS/) has in progress subobject phenotypic feature [42c6269c-25ee-4326-b51c-086f9665bf75](/phenotypic-features/42c6269c-25ee-4326-b51c-086f9665bf75/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1469WVVS/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO1469WVVS](/human-donors/IGVFDO1469WVVS/) has in progress subobject phenotypic feature [5ec82856-d387-4727-9473-c60628ddce27](/phenotypic-features/5ec82856-d387-4727-9473-c60628ddce27/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO1469WVVS/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS9901CQZL](/measurement-sets/IGVFDS9901CQZL/) has sequence file(s): [IGVFFI6393FIKB](/sequence-files/IGVFFI6393FIKB/), [IGVFFI2849DCFE](/sequence-files/IGVFFI2849DCFE/), [IGVFFI1531QEMN](/sequence-files/IGVFFI1531QEMN/), [IGVFFI2779ANEH](/sequence-files/IGVFFI2779ANEH/), [IGVFFI8482BESS](/sequence-files/IGVFFI8482BESS/), [IGVFFI9446WUPH](/sequence-files/IGVFFI9446WUPH/), [IGVFFI1317YCDL](/sequence-files/IGVFFI1317YCDL/), [IGVFFI1540BNPJ](/sequence-files/IGVFFI1540BNPJ/), [IGVFFI7332LLOC](/sequence-files/IGVFFI7332LLOC/), [IGVFFI8686RXYD](/sequence-files/IGVFFI8686RXYD/), [IGVFFI8289JHFP](/sequence-files/IGVFFI8289JHFP/), [IGVFFI6079TNHL](/sequence-files/IGVFFI6079TNHL/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS9901CQZL/"
},
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS9901CQZL](/measurement-sets/IGVFDS9901CQZL/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS9901CQZL/"
}
],
"WARNING": [
{
"category": "missing analysis",
"detail": "Measurement set [IGVFDS9901CQZL](/measurement-sets/IGVFDS9901CQZL/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_for",
"path": "/measurement-sets/IGVFDS9901CQZL/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping",
"contact_pi": {
"@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
"control_for": [],
"controlled_access": false,
"creation_timestamp": "2025-03-19T21:47:00.295679+00:00",
"data_use_limitation_summaries": [
"No limitations"
],
"donors": [
{
"@id": "/human-donors/IGVFDO7186XJLL/",
"accession": "IGVFDO7186XJLL",
"aliases": [
"igvf:corces_donor_BANN1639"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1464XWYC/",
"accession": "IGVFDO1464XWYC",
"aliases": [
"igvf:corces_donor_BANN1809"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3971UIZC/",
"accession": "IGVFDO3971UIZC",
"aliases": [
"igvf:corces_donor_BANN0217"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2028IGVN/",
"accession": "IGVFDO2028IGVN",
"aliases": [
"igvf:corces_donor_BANN1256"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0909BNTN/",
"accession": "IGVFDO0909BNTN",
"aliases": [
"igvf:corces_donor_BANN1554"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4108VCBA/",
"accession": "IGVFDO4108VCBA",
"aliases": [
"igvf:corces_donor_BANN0325"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0112XZXT/",
"accession": "IGVFDO0112XZXT",
"aliases": [
"igvf:corces_donor_BANN0218"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1469WVVS/",
"accession": "IGVFDO1469WVVS",
"aliases": [
"igvf:corces_donor_BANN1063"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI6393FIKB/",
"accession": "IGVFFI6393FIKB",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP033_G6_P080_L007_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T02:23:02.913856+00:00",
"file_format": "fastq",
"file_size": 11810228309,
"href": "/sequence-files/IGVFFI6393FIKB/@@download/IGVFFI6393FIKB.fastq.gz",
"md5sum": "004aba363f642cd21b72df234a4147d9",
"s3_uri": "s3://igvf-files/2025/03/21/3c995e10-c40b-4190-9958-e94e02573e00/IGVFFI6393FIKB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP033_G6_L006_P080_S58_L007_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2849DCFE/",
"accession": "IGVFFI2849DCFE",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP033_G6_P080_L008_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T02:23:15.130474+00:00",
"file_format": "fastq",
"file_size": 11740511022,
"href": "/sequence-files/IGVFFI2849DCFE/@@download/IGVFFI2849DCFE.fastq.gz",
"md5sum": "fbe67acf8ebccd55b8102114cc271699",
"s3_uri": "s3://igvf-files/2025/03/21/a226aa3f-87e5-45d3-a8c7-9f5f53f7e8b8/IGVFFI2849DCFE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP033_G6_L006_P080_S58_L008_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1531QEMN/",
"accession": "IGVFFI1531QEMN",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP033_G6_P080_L006_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T02:22:46.030783+00:00",
"file_format": "fastq",
"file_size": 1018809109,
"href": "/sequence-files/IGVFFI1531QEMN/@@download/IGVFFI1531QEMN.fastq.gz",
"md5sum": "4fc4a84426944de36e10c8ef8e6bfcdb",
"s3_uri": "s3://igvf-files/2025/03/21/5f592a77-0ccd-4c94-a51d-924dd0333d0b/IGVFFI1531QEMN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP033_G6_L006_P080_S58_L006_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2779ANEH/",
"accession": "IGVFFI2779ANEH",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP033_G6_P080_L007_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T02:23:00.284323+00:00",
"file_format": "fastq",
"file_size": 963746363,
"href": "/sequence-files/IGVFFI2779ANEH/@@download/IGVFFI2779ANEH.fastq.gz",
"md5sum": "8e75d24c0c3406b40a28ce78fd4e733d",
"s3_uri": "s3://igvf-files/2025/03/21/a1648379-8084-49d0-bc2d-1c457b2d2a3c/IGVFFI2779ANEH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP033_G6_L006_P080_S58_L007_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8482BESS/",
"accession": "IGVFFI8482BESS",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP033_G6_P080_L008_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T02:23:12.030038+00:00",
"file_format": "fastq",
"file_size": 953895836,
"href": "/sequence-files/IGVFFI8482BESS/@@download/IGVFFI8482BESS.fastq.gz",
"md5sum": "4806af9f67b16f62165a7ef975077855",
"s3_uri": "s3://igvf-files/2025/03/21/bc818002-a387-46dc-a3fb-8ef27c797331/IGVFFI8482BESS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP033_G6_L006_P080_S58_L008_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9446WUPH/",
"accession": "IGVFFI9446WUPH",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP033_G6_P080_L007_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T02:23:06.074700+00:00",
"file_format": "fastq",
"file_size": 8922710314,
"href": "/sequence-files/IGVFFI9446WUPH/@@download/IGVFFI9446WUPH.fastq.gz",
"md5sum": "bb048a10583c61d05ff8a43d63d14edb",
"s3_uri": "s3://igvf-files/2025/03/21/d85efc62-404d-4ab5-8859-0491583c427e/IGVFFI9446WUPH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP033_G6_L006_P080_S58_L007_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1317YCDL/",
"accession": "IGVFFI1317YCDL",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP033_G6_P080_L008_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T02:23:18.219815+00:00",
"file_format": "fastq",
"file_size": 8797412430,
"href": "/sequence-files/IGVFFI1317YCDL/@@download/IGVFFI1317YCDL.fastq.gz",
"md5sum": "d31403e3bae1e276704e0a10ae9c03bc",
"s3_uri": "s3://igvf-files/2025/03/21/62617af7-b73c-4ad1-bde3-db754dedb740/IGVFFI1317YCDL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP033_G6_L006_P080_S58_L008_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1540BNPJ/",
"accession": "IGVFFI1540BNPJ",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP033_G6_P080_L006_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T02:22:51.534536+00:00",
"file_format": "fastq",
"file_size": 11790975505,
"href": "/sequence-files/IGVFFI1540BNPJ/@@download/IGVFFI1540BNPJ.fastq.gz",
"md5sum": "a4f90fb146187f2bc1cd2153572fc7ca",
"s3_uri": "s3://igvf-files/2025/03/21/e8c8e8db-3bc1-4f1d-be91-49375969b366/IGVFFI1540BNPJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP033_G6_L006_P080_S58_L006_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7332LLOC/",
"accession": "IGVFFI7332LLOC",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP033_G6_P080_L006_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T02:22:54.415454+00:00",
"file_format": "fastq",
"file_size": 8849317157,
"href": "/sequence-files/IGVFFI7332LLOC/@@download/IGVFFI7332LLOC.fastq.gz",
"md5sum": "37884a50975d9a071d787be907bd3c21",
"s3_uri": "s3://igvf-files/2025/03/21/a2324b38-d116-4b64-91b9-c040eab59063/IGVFFI7332LLOC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP033_G6_L006_P080_S58_L006_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8686RXYD/",
"accession": "IGVFFI8686RXYD",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP033_G6_P080_L006_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T02:22:48.651330+00:00",
"file_format": "fastq",
"file_size": 954358100,
"href": "/sequence-files/IGVFFI8686RXYD/@@download/IGVFFI8686RXYD.fastq.gz",
"md5sum": "6e0c5f9648729a2e1e58569cd80f7267",
"s3_uri": "s3://igvf-files/2025/03/21/a00c288e-f8e5-4509-8e09-35ffd335a707/IGVFFI8686RXYD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP033_G6_L006_P080_S58_L006_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8289JHFP/",
"accession": "IGVFFI8289JHFP",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP033_G6_P080_L007_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T02:22:57.468598+00:00",
"file_format": "fastq",
"file_size": 1027265354,
"href": "/sequence-files/IGVFFI8289JHFP/@@download/IGVFFI8289JHFP.fastq.gz",
"md5sum": "3b3da1c4466e206a53b3b5846bd32323",
"s3_uri": "s3://igvf-files/2025/03/21/656c332c-9976-4930-991b-a2c5521e32c7/IGVFFI8289JHFP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP033_G6_L006_P080_S58_L007_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6079TNHL/",
"accession": "IGVFFI6079TNHL",
"aliases": [
"igvf:corces_sequenceFile_RNA_RP033_G6_P080_L008_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T02:23:09.231137+00:00",
"file_format": "fastq",
"file_size": 1023258160,
"href": "/sequence-files/IGVFFI6079TNHL/@@download/IGVFFI6079TNHL.fastq.gz",
"md5sum": "3d229e3aab721d05372bbfb35a7ef261",
"s3_uri": "s3://igvf-files/2025/03/21/0eeb6448-f933-4dc4-83c3-80b28aa99326/IGVFFI6079TNHL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_RNA_RP033_G6_L006_P080_S58_L008_I1_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"multiome_size": 2,
"onlist_files": [
"/tabular-files/IGVFFI8751YQRY/"
],
"onlist_method": "no combination",
"preferred_assay_title": "10x multiome",
"protocols": [
"https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn"
],
"related_multiome_datasets": [
{
"@id": "/measurement-sets/IGVFDS7886YBBF/",
"accession": "IGVFDS7886YBBF",
"status": "preview"
}
],
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM9620UKJQ/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM9620UKJQ",
"aliases": [
"igvf:corces_multiplexedSample_RP033_G6"
],
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "putamen",
"term_name": "putamen"
},
{
"@id": "/sample-terms/UBERON_0002038/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "substantia nigra",
"term_name": "substantia nigra"
},
{
"@id": "/sample-terms/UBERON_0002740/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "posterior cingulate gyrus",
"term_name": "posterior cingulate gyrus"
}
],
"status": "preview",
"summary": "multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) substantia nigra tissue associated with Parkinson's disease; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "26",
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"submitted_files_timestamp": "2025-03-21T02:22:46.030783+00:00",
"summary": "single-nucleus RNA sequencing assay (10x multiome)",
"uuid": "c8b08dfd-5056-4191-b830-fb358daaa970"
}