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IGVFDS9896MQFE

released
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Description
Colitis_acute DSS17-DSS-m1,DSS17-DSS-m2,DSS18-DSS-m1,DSS18-DSS-m2; Control DSS17-Control-m3,DSS18-Control-m3
Assay Term
single-cell ATAC-seq
Sample Summaries
  • Mus musculus C57BL/6J colon cell
Protocols
Aliases
buenrostro-bernstein:surya-mouse-colon_mm-set12
Attribution
Jason Buenrostro, Broad

Sequencing Results (Illumina)

3 items
Read Names
fastq
reads
R1
5
Read 1
9.4 GB
Jason Buenrostro, Broad
validated
fastq
reads
R2
5
Read 2
10 GB
Jason Buenrostro, Broad
validated
fastq
reads
I1
5
Barcode index
3.1 GB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
PrimaryCell
Mus musculus C57BL/6J colon cell

Donors

6 items
Aliases
  • buenrostro-bernstein:surya-DSS18-Control-m3
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS17-DSS-m1
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS18-DSS-m2
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS17-Control-m3
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS17-DSS-m2
unspecified
Mus musculus
  • buenrostro-bernstein:surya-DSS18-DSS-m1
unspecified
Mus musculus

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
SHARE-seq: fragments, sparse gene count matrix
  • buenrostro-bernstein:surya-mouse-colitis-primary-cell-analysis-set
Jason Buenrostro, Broad

Related Multiome Datasets

3 items
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set24
Jason Buenrostro, Broad
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set11
Jason Buenrostro, Broad
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
  • buenrostro-bernstein:surya-mouse-colon_mm-set23
Jason Buenrostro, Broad