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"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [c2f14d65-c7f8-46d1-8093-818906473518](/phenotypic-features/c2f14d65-c7f8-46d1-8093-818906473518/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [48e0e9c9-7759-4913-8219-2471979d793e](/phenotypic-features/48e0e9c9-7759-4913-8219-2471979d793e/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS9832WUNH](/measurement-sets/IGVFDS9832WUNH/) has sequence file(s): [IGVFFI9761GNDA](/sequence-files/IGVFFI9761GNDA/), [IGVFFI9399TOQK](/sequence-files/IGVFFI9399TOQK/), [IGVFFI7658NWFP](/sequence-files/IGVFFI7658NWFP/), [IGVFFI2074EFVM](/sequence-files/IGVFFI2074EFVM/), [IGVFFI4039SPFE](/sequence-files/IGVFFI4039SPFE/), [IGVFFI4841ZNXB](/sequence-files/IGVFFI4841ZNXB/), [IGVFFI7662ZNHQ](/sequence-files/IGVFFI7662ZNHQ/), [IGVFFI0762GOAF](/sequence-files/IGVFFI0762GOAF/), [IGVFFI0802UQHD](/sequence-files/IGVFFI0802UQHD/), [IGVFFI7627JYHN](/sequence-files/IGVFFI7627JYHN/), [IGVFFI4583KDLU](/sequence-files/IGVFFI4583KDLU/), [IGVFFI0147GWIQ](/sequence-files/IGVFFI0147GWIQ/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS9832WUNH/"
},
{
"category": "missing strand specificity",
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"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS9832WUNH/"
}
],
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{
"category": "missing analysis",
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}
]
},
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},
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},
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},
{
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}
],
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"lab": {
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"title": "Ryan Corces, Gladstone Institute UCSF"
},
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],
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],
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{
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}
],
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{
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],
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],
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],
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{
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},
{
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},
{
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"term_name": "multiple sclerosis"
},
{
"@id": "/phenotype-terms/DOID_9246/",
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"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/MONDO_0004975/",
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}
],
"institutional_certificates": [
{
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}
],
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"sample_terms": [
{
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"Item"
],
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},
{
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],
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},
{
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"Item"
],
"status": "preview",
"summary": "posterior cingulate gyrus",
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}
],
"status": "preview",
"summary": "multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "26",
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"submitted_by": {
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},
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"summary": "single-nucleus ATAC-seq (10x multiome)",
"uuid": "c7cc108a-52fc-4047-b0f9-af804878290b"
}