{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS9776SMDQ/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS9776SMDQ",
"aliases": [
"bradley-bernstein:scRNA Lib 47",
"buenrostro-bernstein:scRNA Lib 47"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM7551DOFB](/primary-cells/IGVFSM7551DOFB/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM7551DOFB/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS9776SMDQ](/measurement-sets/IGVFDS9776SMDQ/) has sequence file(s): [IGVFFI7257WBCT](/sequence-files/IGVFFI7257WBCT/), [IGVFFI5379UNVT](/sequence-files/IGVFFI5379UNVT/), [IGVFFI9505QZAW](/sequence-files/IGVFFI9505QZAW/), [IGVFFI3302MNYS](/sequence-files/IGVFFI3302MNYS/), [IGVFFI8698RYAK](/sequence-files/IGVFFI8698RYAK/), [IGVFFI3812XPZS](/sequence-files/IGVFFI3812XPZS/), [IGVFFI4931GTGF](/sequence-files/IGVFFI4931GTGF/), [IGVFFI8355ZDRF](/sequence-files/IGVFFI8355ZDRF/), [IGVFFI6287NKHD](/sequence-files/IGVFFI6287NKHD/), [IGVFFI0349YEUR](/sequence-files/IGVFFI0349YEUR/), [IGVFFI3148JLFY](/sequence-files/IGVFFI3148JLFY/), [IGVFFI9155TUAB](/sequence-files/IGVFFI9155TUAB/), [IGVFFI1897PJAM](/sequence-files/IGVFFI1897PJAM/), [IGVFFI3101PZAJ](/sequence-files/IGVFFI3101PZAJ/), [IGVFFI4646KHCD](/sequence-files/IGVFFI4646KHCD/), [IGVFFI6490HBGH](/sequence-files/IGVFFI6490HBGH/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS9776SMDQ/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS9776SMDQ](/measurement-sets/IGVFDS9776SMDQ/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS9776SMDQ/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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{
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"aliases": [
"bradley-bernstein:BioSam 4567_SS-PKR 8",
"buenrostro-bernstein:BioSam 4567_SS-PKR 8"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 8), male, Homo sapiens (29 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:42:01.789246+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "452173f5-6f83-454e-9c72-77b0ba5814ef"
}