{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS9762JBUG/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS9762JBUG",
"aliases": [
"jesse-engreitz:Jurkat_Stim-IL2RA_prom-BioRep2-FFRep1-BinC_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS9762JBUG](/measurement-sets/IGVFDS9762JBUG/) has sequence file(s) [IGVFFI7262EOPN](/sequence-files/IGVFFI7262EOPN/), [IGVFFI8057BHPN](/sequence-files/IGVFFI8057BHPN/), [IGVFFI2894OOKX](/sequence-files/IGVFFI2894OOKX/), [IGVFFI3508DXSC](/sequence-files/IGVFFI3508DXSC/), [IGVFFI2481FVTI](/sequence-files/IGVFFI2481FVTI/), [IGVFFI0925YRKZ](/sequence-files/IGVFFI0925YRKZ/), [IGVFFI8862WAIU](/sequence-files/IGVFFI8862WAIU/), [IGVFFI6956YYPR](/sequence-files/IGVFFI6956YYPR/), [IGVFFI2767KTJP](/sequence-files/IGVFFI2767KTJP/), [IGVFFI0903CNJZ](/sequence-files/IGVFFI0903CNJZ/), [IGVFFI2670HWSD](/sequence-files/IGVFFI2670HWSD/), [IGVFFI8106NHFV](/sequence-files/IGVFFI8106NHFV/), [IGVFFI1417HCTY](/sequence-files/IGVFFI1417HCTY/), [IGVFFI3509UJRJ](/sequence-files/IGVFFI3509UJRJ/), [IGVFFI8403IGXT](/sequence-files/IGVFFI8403IGXT/), [IGVFFI4470OGTA](/sequence-files/IGVFFI4470OGTA/), [IGVFFI3231LFSH](/sequence-files/IGVFFI3231LFSH/), [IGVFFI8252QCQH](/sequence-files/IGVFFI8252QCQH/), [IGVFFI3404AWDX](/sequence-files/IGVFFI3404AWDX/), [IGVFFI8571IYXY](/sequence-files/IGVFFI8571IYXY/), [IGVFFI6568VGWO](/sequence-files/IGVFFI6568VGWO/), [IGVFFI5960ECVQ](/sequence-files/IGVFFI5960ECVQ/), [IGVFFI5318IMKF](/sequence-files/IGVFFI5318IMKF/), [IGVFFI9787XIYM](/sequence-files/IGVFFI9787XIYM/), [IGVFFI8204CVOQ](/sequence-files/IGVFFI8204CVOQ/), [IGVFFI6202FOHB](/sequence-files/IGVFFI6202FOHB/), [IGVFFI7705POSG](/sequence-files/IGVFFI7705POSG/), [IGVFFI3939YPBB](/sequence-files/IGVFFI3939YPBB/), [IGVFFI4264NPTE](/sequence-files/IGVFFI4264NPTE/), [IGVFFI7870PVKY](/sequence-files/IGVFFI7870PVKY/), [IGVFFI2660BVHI](/sequence-files/IGVFFI2660BVHI/), [IGVFFI8085WBCF](/sequence-files/IGVFFI8085WBCF/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS9762JBUG/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS9762JBUG](/measurement-sets/IGVFDS9762JBUG/) has sequence file(s): [IGVFFI7262EOPN](/sequence-files/IGVFFI7262EOPN/), [IGVFFI8057BHPN](/sequence-files/IGVFFI8057BHPN/), [IGVFFI2894OOKX](/sequence-files/IGVFFI2894OOKX/), [IGVFFI3508DXSC](/sequence-files/IGVFFI3508DXSC/), [IGVFFI2481FVTI](/sequence-files/IGVFFI2481FVTI/), [IGVFFI0925YRKZ](/sequence-files/IGVFFI0925YRKZ/), [IGVFFI8862WAIU](/sequence-files/IGVFFI8862WAIU/), [IGVFFI6956YYPR](/sequence-files/IGVFFI6956YYPR/), [IGVFFI2767KTJP](/sequence-files/IGVFFI2767KTJP/), [IGVFFI0903CNJZ](/sequence-files/IGVFFI0903CNJZ/), [IGVFFI2670HWSD](/sequence-files/IGVFFI2670HWSD/), [IGVFFI8106NHFV](/sequence-files/IGVFFI8106NHFV/), [IGVFFI1417HCTY](/sequence-files/IGVFFI1417HCTY/), [IGVFFI3509UJRJ](/sequence-files/IGVFFI3509UJRJ/), [IGVFFI8403IGXT](/sequence-files/IGVFFI8403IGXT/), [IGVFFI4470OGTA](/sequence-files/IGVFFI4470OGTA/), [IGVFFI3231LFSH](/sequence-files/IGVFFI3231LFSH/), [IGVFFI8252QCQH](/sequence-files/IGVFFI8252QCQH/), [IGVFFI3404AWDX](/sequence-files/IGVFFI3404AWDX/), [IGVFFI8571IYXY](/sequence-files/IGVFFI8571IYXY/), [IGVFFI6568VGWO](/sequence-files/IGVFFI6568VGWO/), [IGVFFI5960ECVQ](/sequence-files/IGVFFI5960ECVQ/), [IGVFFI5318IMKF](/sequence-files/IGVFFI5318IMKF/), [IGVFFI9787XIYM](/sequence-files/IGVFFI9787XIYM/), [IGVFFI8204CVOQ](/sequence-files/IGVFFI8204CVOQ/), [IGVFFI6202FOHB](/sequence-files/IGVFFI6202FOHB/), [IGVFFI7705POSG](/sequence-files/IGVFFI7705POSG/), [IGVFFI3939YPBB](/sequence-files/IGVFFI3939YPBB/), [IGVFFI4264NPTE](/sequence-files/IGVFFI4264NPTE/), [IGVFFI7870PVKY](/sequence-files/IGVFFI7870PVKY/), [IGVFFI2660BVHI](/sequence-files/IGVFFI2660BVHI/), [IGVFFI8085WBCF](/sequence-files/IGVFFI8085WBCF/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS9762JBUG/"
},
{
"category": "mismatched status",
"detail": "Preview in vitro system [IGVFSM4784GKZI](/in-vitro-systems/IGVFSM4784GKZI/) has in progress subobject treatment [cf87f410-54ee-48ef-b654-8443c4fee032](/treatments/cf87f410-54ee-48ef-b654-8443c4fee032/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM4784GKZI/"
},
{
"category": "mismatched status",
"detail": "Preview in vitro system [IGVFSM4784GKZI](/in-vitro-systems/IGVFSM4784GKZI/) has in progress subobject treatment [4b5f0d13-ec20-4b91-85f5-a009cd91451f](/treatments/4b5f0d13-ec20-4b91-85f5-a009cd91451f/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM4784GKZI/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS9762JBUG](/measurement-sets/IGVFDS9762JBUG/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS9762JBUG/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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{
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"accession": "IGVFDS6874YIXA",
"aliases": [
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],
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}
],
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"donors": [
{
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"accession": "IGVFDO1080XFGV",
"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
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},
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},
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},
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},
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},
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"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2024-11-22T06:19:21.808986+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000134460/",
"geneid": "ENSG00000134460",
"name": "interleukin 2 receptor subunit alpha",
"status": "released",
"symbol": "IL2RA",
"synonyms": [
"interleukin-2 receptor subunit alpha",
"IL2R",
"TAC antigen",
"IMD41",
"IL-2R subunit alpha",
"CD25",
"IL-2 receptor subunit alpha",
"IDDM10",
"TCGFR",
"p55",
"interleukin 2 receptor, alpha"
]
}
],
"uuid": "74e41340-0121-4c64-a2b8-c1865df1db1d"
}