{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS9743TYOT/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS9743TYOT",
"aliases": [
"jesse-engreitz:Jurkat_Stim-IL2RA_prom-BioRep2-FFRep1-BinB_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview in vitro system [IGVFSM1469NQHM](/in-vitro-systems/IGVFSM1469NQHM/) has in progress subobject treatment [cf87f410-54ee-48ef-b654-8443c4fee032](/treatments/cf87f410-54ee-48ef-b654-8443c4fee032/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM1469NQHM/"
},
{
"category": "mismatched status",
"detail": "Preview in vitro system [IGVFSM1469NQHM](/in-vitro-systems/IGVFSM1469NQHM/) has in progress subobject treatment [4b5f0d13-ec20-4b91-85f5-a009cd91451f](/treatments/4b5f0d13-ec20-4b91-85f5-a009cd91451f/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM1469NQHM/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS9743TYOT](/measurement-sets/IGVFDS9743TYOT/) has sequence file(s) [IGVFFI4079JILX](/sequence-files/IGVFFI4079JILX/), [IGVFFI1373KUKR](/sequence-files/IGVFFI1373KUKR/), [IGVFFI4004OCJK](/sequence-files/IGVFFI4004OCJK/), [IGVFFI5438YNQO](/sequence-files/IGVFFI5438YNQO/), [IGVFFI6623WDMM](/sequence-files/IGVFFI6623WDMM/), [IGVFFI9003OVDO](/sequence-files/IGVFFI9003OVDO/), [IGVFFI6431LCJA](/sequence-files/IGVFFI6431LCJA/), [IGVFFI2836PSYE](/sequence-files/IGVFFI2836PSYE/), [IGVFFI9659HSEI](/sequence-files/IGVFFI9659HSEI/), [IGVFFI2980IPAV](/sequence-files/IGVFFI2980IPAV/), [IGVFFI7719FMIO](/sequence-files/IGVFFI7719FMIO/), [IGVFFI0216UNBO](/sequence-files/IGVFFI0216UNBO/), [IGVFFI0284EXJD](/sequence-files/IGVFFI0284EXJD/), [IGVFFI4763QAAY](/sequence-files/IGVFFI4763QAAY/), [IGVFFI1201EWXS](/sequence-files/IGVFFI1201EWXS/), [IGVFFI4840JNEW](/sequence-files/IGVFFI4840JNEW/), [IGVFFI4837ZJSA](/sequence-files/IGVFFI4837ZJSA/), [IGVFFI3522ZFSE](/sequence-files/IGVFFI3522ZFSE/), [IGVFFI4136UUTG](/sequence-files/IGVFFI4136UUTG/), [IGVFFI3850NQMD](/sequence-files/IGVFFI3850NQMD/), [IGVFFI2947EOWS](/sequence-files/IGVFFI2947EOWS/), [IGVFFI0242KBIS](/sequence-files/IGVFFI0242KBIS/), [IGVFFI4668QMNR](/sequence-files/IGVFFI4668QMNR/), [IGVFFI6260AZKX](/sequence-files/IGVFFI6260AZKX/), [IGVFFI2651LPUP](/sequence-files/IGVFFI2651LPUP/), [IGVFFI2398VVPH](/sequence-files/IGVFFI2398VVPH/), [IGVFFI8969QEUS](/sequence-files/IGVFFI8969QEUS/), [IGVFFI8000RXPO](/sequence-files/IGVFFI8000RXPO/), [IGVFFI6862TNMK](/sequence-files/IGVFFI6862TNMK/), [IGVFFI1739PUZS](/sequence-files/IGVFFI1739PUZS/), [IGVFFI4665JGTL](/sequence-files/IGVFFI4665JGTL/), [IGVFFI2556JBWG](/sequence-files/IGVFFI2556JBWG/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS9743TYOT/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS9743TYOT](/measurement-sets/IGVFDS9743TYOT/) has sequence file(s): [IGVFFI4079JILX](/sequence-files/IGVFFI4079JILX/), [IGVFFI1373KUKR](/sequence-files/IGVFFI1373KUKR/), [IGVFFI4004OCJK](/sequence-files/IGVFFI4004OCJK/), [IGVFFI5438YNQO](/sequence-files/IGVFFI5438YNQO/), [IGVFFI6623WDMM](/sequence-files/IGVFFI6623WDMM/), [IGVFFI9003OVDO](/sequence-files/IGVFFI9003OVDO/), [IGVFFI6431LCJA](/sequence-files/IGVFFI6431LCJA/), [IGVFFI2836PSYE](/sequence-files/IGVFFI2836PSYE/), [IGVFFI9659HSEI](/sequence-files/IGVFFI9659HSEI/), [IGVFFI2980IPAV](/sequence-files/IGVFFI2980IPAV/), [IGVFFI7719FMIO](/sequence-files/IGVFFI7719FMIO/), [IGVFFI0216UNBO](/sequence-files/IGVFFI0216UNBO/), [IGVFFI0284EXJD](/sequence-files/IGVFFI0284EXJD/), [IGVFFI4763QAAY](/sequence-files/IGVFFI4763QAAY/), [IGVFFI1201EWXS](/sequence-files/IGVFFI1201EWXS/), [IGVFFI4840JNEW](/sequence-files/IGVFFI4840JNEW/), [IGVFFI4837ZJSA](/sequence-files/IGVFFI4837ZJSA/), [IGVFFI3522ZFSE](/sequence-files/IGVFFI3522ZFSE/), [IGVFFI4136UUTG](/sequence-files/IGVFFI4136UUTG/), [IGVFFI3850NQMD](/sequence-files/IGVFFI3850NQMD/), [IGVFFI2947EOWS](/sequence-files/IGVFFI2947EOWS/), [IGVFFI0242KBIS](/sequence-files/IGVFFI0242KBIS/), [IGVFFI4668QMNR](/sequence-files/IGVFFI4668QMNR/), [IGVFFI6260AZKX](/sequence-files/IGVFFI6260AZKX/), [IGVFFI2651LPUP](/sequence-files/IGVFFI2651LPUP/), [IGVFFI2398VVPH](/sequence-files/IGVFFI2398VVPH/), [IGVFFI8969QEUS](/sequence-files/IGVFFI8969QEUS/), [IGVFFI8000RXPO](/sequence-files/IGVFFI8000RXPO/), [IGVFFI6862TNMK](/sequence-files/IGVFFI6862TNMK/), [IGVFFI1739PUZS](/sequence-files/IGVFFI1739PUZS/), [IGVFFI4665JGTL](/sequence-files/IGVFFI4665JGTL/), [IGVFFI2556JBWG](/sequence-files/IGVFFI2556JBWG/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS9743TYOT/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS9743TYOT](/measurement-sets/IGVFDS9743TYOT/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS9743TYOT/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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{
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"accession": "IGVFDS6874YIXA",
"aliases": [
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],
"status": "preview"
}
],
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"creation_timestamp": "2024-11-22T00:48:13.693664+00:00",
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{
"@id": "/human-donors/IGVFDO1080XFGV/",
"accession": "IGVFDO1080XFGV",
"aliases": [
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],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
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},
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},
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},
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},
{
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"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2024-11-22T06:18:51.374780+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000134460/",
"geneid": "ENSG00000134460",
"name": "interleukin 2 receptor subunit alpha",
"status": "released",
"symbol": "IL2RA",
"synonyms": [
"interleukin-2 receptor subunit alpha",
"IL2R",
"TAC antigen",
"IMD41",
"IL-2R subunit alpha",
"CD25",
"IL-2 receptor subunit alpha",
"IDDM10",
"TCGFR",
"p55",
"interleukin 2 receptor, alpha"
]
}
],
"uuid": "7b03303b-c079-462c-98b9-d576a6db39e9"
}