IGVFDS9655EEFO

preview

This object is in preview status. Metadata is subject to change until this object is released.

File Set Type

experimental data

Summary

single-nucleus RNA sequencing assay (10x multiome)

Assay Term

single-nucleus RNA sequencing assay

Sample Summaries

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples

Protocols

https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn

Aliases

igvf:corces_measurementSet_X010_G8_RNA

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Results (Illumina)

4 items

Read Names

IGVFFI1022NMHF

fastq

reads

Illumina NovaSeq 6000

HJ7TNDSX5

7.5 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI3678SHDS

fastq

reads

Illumina NovaSeq 6000

HJ7TNDSX5

1.1 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI4526IWZI

fastq

reads

Illumina NovaSeq 6000

HJ7TNDSX5

3.3 GB

Ryan Corces, Gladstone Institute UCSF

validated

IGVFFI6869CCIF

fastq

reads

Illumina NovaSeq 6000

HJ7TNDSX5

1.1 GB

Ryan Corces, Gladstone Institute UCSF

validated

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Associated Construct Library Sets

Summary

IGVFSM4584XRDP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples