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IGVFDS9636SNGC

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 62.0 years) peripheral blood mononuclear cell; ... and 17 more samples
Protocols
Aliases
jimmie-ye:XX11-SC1_snATAC

Sequencing Results (Illumina)

24 items
Read Names
fastq
reads
R2
74
Barcode index
3.7 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
78
Barcode index
3.9 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
78
1.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
76
Read 1
4.9 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
78
Read 1
7.0 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
74
1.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
77
Read 2
11 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
73
Read 1
6.9 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
76
Barcode index
2.5 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
75
Barcode index
3.8 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 62.0 years) peripheral blood mononuclear cell; ... and 17 more samples

Donors

19 items
Aliases
  • jimmie-ye:donor_196
female
Homo sapiens
  • jimmie-ye:donor_205
female
Homo sapiens
  • jimmie-ye:donor_343
female
Homo sapiens
  • jimmie-ye:donor_203
female
Homo sapiens
  • jimmie-ye:donor_168
female
Homo sapiens
  • jimmie-ye:donor_335
female
Homo sapiens
  • jimmie-ye:donor_198
female
Homo sapiens
  • jimmie-ye:donor_347
male
Homo sapiens
  • jimmie-ye:donor_167
male
Homo sapiens
  • jimmie-ye:donor_82
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • jimmie-ye:XX11-SC1_snRNA
Jimmie Ye, UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Jimmie Ye, UCSF