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IGVFDS9604WYAS

released
File Set Type
experimental data
Summary
Parse SPLiT-seq
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Mus musculus B6(SJL)-Trem2<em1Aduci>/J (female, 65 days) hypothalamus tissue; Mus musculus B6(SJL)-Trem2<em1Aduci>/J (male, 69 days) liver tissue; ... and 94 more samples
Protocols
Aliases
ali-mortazavi:015_67D_illumina
Attribution
Ali Mortazavi, UCI

Sequencing Results (Illumina)

4 items
Read Names
fastq
reads
R1
2
Read 1
AAC5N2NHV
2
22 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
2
Read 2
AAC5N2NHV
2
18 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
1
Read 2
AAC5N2NHV
1
18 GB
Ali Mortazavi, UCI
validated
fastq
reads
R1
1
Read 1
AAC5N2NHV
1
22 GB
Ali Mortazavi, UCI
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Mus musculus B6(SJL)-Trem2<em1Aduci>/J (female, 65 days) hypothalamus tissue; Mus musculus B6(SJL)-Trem2<em1Aduci>/J (male, 69 days) liver tissue; ... and 94 more samples

Donors

10 items
Aliases
  • ali-mortazavi:239_TREM2_10M
male
Mus musculus
  • ali-mortazavi:245_TREM2_10M
male
Mus musculus
  • ali-mortazavi:240_TREM2_10F
female
Mus musculus
  • ali-mortazavi:250_TREM2_10F
female
Mus musculus
  • ali-mortazavi:242_TREM2_10F
female
Mus musculus
  • ali-mortazavi:241_TREM2_10M
male
Mus musculus
  • ali-mortazavi:248_TREM2_10F
female
Mus musculus
  • ali-mortazavi:243_TREM2_10M
male
Mus musculus
  • ali-mortazavi:244_TREM2_10F
female
Mus musculus
  • ali-mortazavi:247_TREM2_10M
male
Mus musculus

Assay Details

Sequencing Library Types
mRNA enriched

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:igvf_015_Subpool_UDI26_total+core
Ali Mortazavi, UCI