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IGVFDS9604EHJY
IGVFDS9604EHJY
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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP004_G2_RNA
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0536MWPK
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
5
1.9 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0707GPBL
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
5
282 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2388LVYZ
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
6
1.8 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2812KASV
fastq
reads
R2
1
Read 2
Illumina NovaSeq X
223JJGLT3
8
1.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3839QYXW
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
6
849 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5303QBGU
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
8
253 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI5342HWRY
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
6
251 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6144XHDX
fastq
reads
I2
1
Illumina NovaSeq X
223JJGLT3
5
256 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7285YLEP
fastq
reads
I1
1
Illumina NovaSeq X
223JJGLT3
7
265 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7507SKZR
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223JJGLT3
8
777 MB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM9557IMSU
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples
Donors
12 items
1
2
Accession
Aliases
Sex
Taxa
IGVFDO0966KXTA
igvf:corces_donor_BANN0138
female
Homo sapiens
IGVFDO1469WVVS
igvf:corces_donor_BANN1063
male
Homo sapiens
IGVFDO2028IGVN
igvf:corces_donor_BANN1256
female
Homo sapiens
IGVFDO2801HZMZ
igvf:corces_donor_BANN1028
male
Homo sapiens
IGVFDO3911JQLE
igvf:corces_donor_BANN1412
male
Homo sapiens
IGVFDO3971UIZC
igvf:corces_donor_BANN0217
female
Homo sapiens
IGVFDO4191KJBR
igvf:corces_donor_BANN0129
male
Homo sapiens
IGVFDO6513APBX
igvf:corces_donor_BANN0210
male
Homo sapiens
IGVFDO6837RJUQ
igvf:corces_donor_BANN1201
male
Homo sapiens
IGVFDO8344LUQZ
igvf:corces_donor_BANN0621
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0549PHUZ
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
igvf:corces_measurementSet_RP004_G2_ATAC
Ryan Corces, Gladstone Institute UCSF