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IGVFDS9590YCER

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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 30.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 18.0 years) peripheral blood mononuclear cell; ... and 17 more samples
Protocols
Aliases
jimmie-ye:XX6-SC1_snATAC

Sequencing Results (Illumina)

20 items
Read Names
fastq
reads
R3
472
Read 2
11 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
474
Read 1
7.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
476
1.7 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
476
Read 2
11 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
474
Read 2
11 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
474
1.6 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
474
Barcode index
3.9 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
476
Read 1
7.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
472
Barcode index
3.9 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
472
1.7 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 30.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 18.0 years) peripheral blood mononuclear cell; ... and 17 more samples

Donors

19 items
Aliases
  • jimmie-ye:donor_80
male
Homo sapiens
  • jimmie-ye:donor_214
male
Homo sapiens
  • jimmie-ye:donor_95
female
Homo sapiens
  • jimmie-ye:donor_102
female
Homo sapiens
  • jimmie-ye:donor_252
female
Homo sapiens
  • jimmie-ye:donor_209
male
Homo sapiens
  • jimmie-ye:donor_238
female
Homo sapiens
  • jimmie-ye:donor_37
male
Homo sapiens
  • jimmie-ye:donor_41
male
Homo sapiens
  • jimmie-ye:donor_248
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • jimmie-ye:XX6-SC1_snRNA
Jimmie Ye, UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Jimmie Ye, UCSF