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INDEXED
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MeasurementSet
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IGVFDS9558NTBE
IGVFDS9558NTBE
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File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_X050_G6_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0196GWKI
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223HC3LT3
8
979 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI0618NIHV
fastq
reads
I1
1
Illumina NovaSeq X
223HC3LT3
8
413 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1777GLAN
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
223HC3LT3
5
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI1827HYYT
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223HC3LT3
6
944 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2121KTOA
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
223HC3LT3
5
932 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2209VZTE
fastq
reads
I1
1
Illumina NovaSeq X
223HC3LT3
6
402 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI2257GOGG
fastq
reads
I1
1
Illumina NovaSeq X
223HC3LT3
7
414 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3307SWAW
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223HC3LT3
5
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6013VHDW
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223HC3LT3
6
1.6 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6234XTEA
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
223HC3LT3
8
1.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM8373BGDE
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples
Donors
10 items
Accession
Aliases
Sex
Taxa
IGVFDO0967LMSM
igvf:corces_donor_BANN1973
male
Homo sapiens
IGVFDO2559GIIZ
igvf:corces_donor_BANN2103
male
Homo sapiens
IGVFDO4825ZGIS
igvf:corces_donor_BANN2057
male
Homo sapiens
IGVFDO5205IAEO
igvf:corces_donor_BANN1632
male
Homo sapiens
IGVFDO6000JDZW
igvf:corces_donor_BANN1858
male
Homo sapiens
IGVFDO6380POHE
igvf:corces_donor_BANN0124
male
Homo sapiens
IGVFDO7186XJLL
igvf:corces_donor_BANN1639
male
Homo sapiens
IGVFDO7227BIXW
igvf:corces_donor_BANN1614
male
Homo sapiens
IGVFDO7387JZDV
igvf:corces_donor_BANN1349
female
Homo sapiens
IGVFDO9236YUAT
igvf:corces_donor_BANN0227
male
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS2724ZQZM
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_X050_G6_RNA
Ryan Corces, Gladstone Institute UCSF