{
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],
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{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS9527RJVT](/measurement-sets/IGVFDS9527RJVT/) has sequence file(s): [IGVFFI0695COCF](/sequence-files/IGVFFI0695COCF/), [IGVFFI1187WPAR](/sequence-files/IGVFFI1187WPAR/), [IGVFFI0494JWFY](/sequence-files/IGVFFI0494JWFY/), [IGVFFI5981HFKO](/sequence-files/IGVFFI5981HFKO/), [IGVFFI8918VWNB](/sequence-files/IGVFFI8918VWNB/), [IGVFFI5655LUJS](/sequence-files/IGVFFI5655LUJS/), [IGVFFI2973DMIY](/sequence-files/IGVFFI2973DMIY/), [IGVFFI6903EEOQ](/sequence-files/IGVFFI6903EEOQ/), [IGVFFI8733REZX](/sequence-files/IGVFFI8733REZX/), [IGVFFI9162PTCT](/sequence-files/IGVFFI9162PTCT/), [IGVFFI7429AKCH](/sequence-files/IGVFFI7429AKCH/), [IGVFFI2118ERUN](/sequence-files/IGVFFI2118ERUN/), [IGVFFI6864TNIJ](/sequence-files/IGVFFI6864TNIJ/), [IGVFFI0548FWMT](/sequence-files/IGVFFI0548FWMT/), [IGVFFI8646VJEH](/sequence-files/IGVFFI8646VJEH/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
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},
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},
{
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},
"status": "preview",
"submitted_file_name": "/oak/stanford/groups/engreitz/Users/kangh/TeloHAEC_Perturb-seq_2kG/210616_Broad_fastq/scRNAseq_2kG_2PMDox1_7_b_AATCTCTC_L001_I1_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS7943IIWZ/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 86015c12-b9a6-43ba-9601-5d75aab4d39c was removed from this measurement set.",
"preferred_assay_title": "Perturb-seq",
"protocols": [
"https://www.protocols.io/view/systematic-perturb-seq-to-discover-endothelial-cel-261ged73yv47/v1"
],
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM7408HYIB/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7408HYIB",
"aliases": [
"jesse-engreitz:in_vitro_systems-scRNAseq_2kG_2PMDox1_7"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS1298TUYG/",
"accession": "IGVFDS1298TUYG",
"file_set_type": "guide library",
"status": "preview",
"summary": "guide (sgRNA) library targeting genes in many genomic loci"
}
],
"modifications": [
{
"@id": "/crispr-modifications/b4bc725a-8eeb-4180-9789-bece3516c0c1/",
"modality": "interference",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:TeloHAEC"
],
"status": "released",
"summary": "TeloHAEC",
"term_name": "TeloHAEC"
}
],
"status": "preview",
"summary": "TeloHAEC cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "preview",
"submitted_by": {
"@id": "/users/05fa0dc9-0e33-427c-9d1f-82393edc4a03/",
"title": "Helen Kang"
},
"submitted_files_timestamp": "2023-12-20T23:36:41.409190+00:00",
"summary": "CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting genes in many genomic loci",
"uuid": "c5dc9e7a-cf42-4b30-a40d-9bfcbe751cdb"
}