IGVFDS9522BMQK

released
{
    "@context": "/terms/",
    "@id": "/measurement-sets/IGVFDS9522BMQK/",
    "@type": [
        "MeasurementSet",
        "FileSet",
        "Item"
    ],
    "accession": "IGVFDS9522BMQK",
    "aliases": [
        "ali-mortazavi:B01_13G_illumina"
    ],
    "assay_term": {
        "@id": "/assay-terms/OBI_0003109/",
        "status": "released",
        "term_name": "single-nucleus RNA sequencing assay"
    },
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "NTR term ID",
                "detail": "Sample term for [NTR_0000646](/sample-terms/NTR_0000646/) has been newly requested. Ontology terms with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_ntr_term_id",
                "path": "/sample-terms/NTR_0000646/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping",
        "contact_pi": {
            "@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
            "title": "Ali Mortazavi"
        },
        "title": "Center for Mouse Genomic Variation at Single Cell Resolution"
    },
    "control_for": [],
    "creation_timestamp": "2023-08-25T17:26:24.040554+00:00",
    "donors": [
        {
            "@id": "/rodent-donors/IGVFDO6942KQBN/",
            "accession": "IGVFDO6942KQBN",
            "aliases": [
                "ali-mortazavi:117_B6J_10M"
            ],
            "sex": "male",
            "status": "released",
            "taxa": "Mus musculus"
        },
        {
            "@id": "/rodent-donors/IGVFDO4816HOFW/",
            "accession": "IGVFDO4816HOFW",
            "aliases": [
                "ali-mortazavi:107_CASTJ_10M"
            ],
            "sex": "male",
            "status": "released",
            "taxa": "Mus musculus"
        },
        {
            "@id": "/rodent-donors/IGVFDO8652OFEQ/",
            "accession": "IGVFDO8652OFEQ",
            "aliases": [
                "ali-mortazavi:106_CASTJ_10F"
            ],
            "sex": "female",
            "status": "released",
            "taxa": "Mus musculus"
        },
        {
            "@id": "/rodent-donors/IGVFDO9333ACQP/",
            "accession": "IGVFDO9333ACQP",
            "aliases": [
                "ali-mortazavi:120_B6J_10F"
            ],
            "sex": "female",
            "status": "released",
            "taxa": "Mus musculus"
        },
        {
            "@id": "/rodent-donors/IGVFDO1486RZJK/",
            "accession": "IGVFDO1486RZJK",
            "aliases": [
                "ali-mortazavi:105_CASTJ_10M"
            ],
            "sex": "male",
            "status": "released",
            "taxa": "Mus musculus"
        },
        {
            "@id": "/rodent-donors/IGVFDO7361LABA/",
            "accession": "IGVFDO7361LABA",
            "aliases": [
                "ali-mortazavi:118_B6J_10F"
            ],
            "sex": "female",
            "status": "released",
            "taxa": "Mus musculus"
        },
        {
            "@id": "/rodent-donors/IGVFDO0493VGMC/",
            "accession": "IGVFDO0493VGMC",
            "aliases": [
                "ali-mortazavi:108_CASTJ_10F"
            ],
            "sex": "female",
            "status": "released",
            "taxa": "Mus musculus"
        },
        {
            "@id": "/rodent-donors/IGVFDO3261YWHI/",
            "accession": "IGVFDO3261YWHI",
            "aliases": [
                "ali-mortazavi:119_B6J_10M"
            ],
            "sex": "male",
            "status": "released",
            "taxa": "Mus musculus"
        }
    ],
    "externally_hosted": false,
    "file_set_type": "experimental data",
    "files": [
        {
            "@id": "/sequence-files/IGVFFI5523CTAF/",
            "accession": "IGVFFI5523CTAF",
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-08-26T00:37:10.511959+00:00",
            "file_format": "fastq",
            "file_size": 11764063367,
            "href": "/sequence-files/IGVFFI5523CTAF/@@download/IGVFFI5523CTAF.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/08/26/8e5c05f5-df92-461c-9194-aaf72b46ea69/IGVFFI5523CTAF.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0010963/",
                "status": "released",
                "term_name": "Illumina NextSeq 2000"
            },
            "status": "released",
            "submitted_file_name": "igvf_b01/next2/igvf_b01_B07_E_next_N2_R1.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI6880QBPQ/",
            "accession": "IGVFFI6880QBPQ",
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-08-26T00:14:00.386223+00:00",
            "file_format": "fastq",
            "file_size": 12396120541,
            "href": "/sequence-files/IGVFFI6880QBPQ/@@download/IGVFFI6880QBPQ.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/08/26/2b23e4ca-c82f-46fc-a785-0b7851b5ff9c/IGVFFI6880QBPQ.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0010963/",
                "status": "released",
                "term_name": "Illumina NextSeq 2000"
            },
            "status": "released",
            "submitted_file_name": "igvf_b01/next1/igvf_b01_B07_E_next_N1_R1.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI5362BFQL/",
            "accession": "IGVFFI5362BFQL",
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-08-26T00:28:57.628600+00:00",
            "file_format": "fastq",
            "file_size": 6753074942,
            "href": "/sequence-files/IGVFFI5362BFQL/@@download/IGVFFI5362BFQL.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/08/26/a61bf6c2-394a-49d6-a4a0-095ecf31cf02/IGVFFI5362BFQL.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0010963/",
                "status": "released",
                "term_name": "Illumina NextSeq 2000"
            },
            "status": "released",
            "submitted_file_name": "igvf_b01/next1/igvf_b01_B07_E_next_N1_R2.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/sequence-files/IGVFFI2195RYKC/",
            "accession": "IGVFFI2195RYKC",
            "content_type": "reads",
            "controlled_access": false,
            "creation_timestamp": "2023-08-26T00:50:33.624723+00:00",
            "file_format": "fastq",
            "file_size": 6614805440,
            "href": "/sequence-files/IGVFFI2195RYKC/@@download/IGVFFI2195RYKC.fastq.gz",
            "s3_uri": "s3://igvf-files/2023/08/26/138b8dba-93ee-4171-a622-dad3d3d563c0/IGVFFI2195RYKC.fastq.gz",
            "sequencing_platform": {
                "@id": "/platform-terms/EFO_0010963/",
                "status": "released",
                "term_name": "Illumina NextSeq 2000"
            },
            "status": "released",
            "submitted_file_name": "igvf_b01/next2/igvf_b01_B07_E_next_N2_R2.fastq.gz",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI9335YMXJ/",
            "accession": "IGVFFI9335YMXJ",
            "content_type": "seqspec",
            "creation_timestamp": "2024-09-03T18:22:56.379041+00:00",
            "file_format": "yaml",
            "file_size": 1111,
            "href": "/configuration-files/IGVFFI9335YMXJ/@@download/IGVFFI9335YMXJ.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/09/03/a2d18776-3ff6-4d10-9d5f-17e6c0384f28/IGVFFI9335YMXJ.yaml.gz",
            "status": "released",
            "upload_status": "validated"
        },
        {
            "@id": "/configuration-files/IGVFFI8707OQUG/",
            "accession": "IGVFFI8707OQUG",
            "content_type": "seqspec",
            "creation_timestamp": "2024-09-03T18:22:54.864559+00:00",
            "file_format": "yaml",
            "file_size": 1113,
            "href": "/configuration-files/IGVFFI8707OQUG/@@download/IGVFFI8707OQUG.yaml.gz",
            "s3_uri": "s3://igvf-files/2024/09/03/91f95721-05cf-4a34-9e43-728f78ac6253/IGVFFI8707OQUG.yaml.gz",
            "status": "released",
            "upload_status": "validated"
        }
    ],
    "input_for": [
        "/analysis-sets/IGVFDS5115IZVN/",
        "/analysis-sets/IGVFDS1377KBXL/",
        "/analysis-sets/IGVFDS2498XYWS/",
        "/analysis-sets/IGVFDS9180SYAE/",
        "/analysis-sets/IGVFDS2760LQIX/",
        "/analysis-sets/IGVFDS9744VNMR/"
    ],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
    "preferred_assay_title": "Parse SPLiT-seq",
    "protocols": [
        "https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1",
        "https://www.protocols.io/view/evercode-wt-v2-2-1-eq2lyj9relx9/v1",
        "https://www.protocols.io/view/cdna-exome-capture-v1-0-1-36wgq3b83lk5/v1",
        "https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-cryopreser-4r3l22y2pl1y/v1"
    ],
    "release_timestamp": "2024-05-08T23:38:41.523079+00:00",
    "samples": [
        {
            "@id": "/multiplexed-samples/IGVFSM8722YQAW/",
            "@type": [
                "MultiplexedSample",
                "Sample",
                "Item"
            ],
            "accession": "IGVFSM8722YQAW",
            "aliases": [
                "ali-mortazavi:subpool_b01_13g"
            ],
            "classifications": [
                "multiplexed sample"
            ],
            "construct_library_sets": [],
            "disease_terms": [],
            "modifications": [],
            "sample_terms": [
                {
                    "@id": "/sample-terms/NTR_0000646/",
                    "@type": [
                        "SampleTerm",
                        "OntologyTerm",
                        "Item"
                    ],
                    "status": "released",
                    "summary": "left cerebral cortex",
                    "term_name": "left cerebral cortex"
                }
            ],
            "status": "released",
            "summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
            "taxa": "Mus musculus",
            "treatments": []
        }
    ],
    "schema_version": "23",
    "sequencing_library_types": [
        "exome capture"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
        "title": "Diane Trout"
    },
    "submitted_files_timestamp": "2023-08-26T00:14:00.386223+00:00",
    "summary": "Parse SPLiT-seq",
    "uuid": "736ce0d7-af0c-44a2-844e-affb2cccdb0c"
}