IGVFDS9493HAGQ

1{
2    "@context": "/terms/",
3    "@id": "/measurement-sets/IGVFDS9493HAGQ/",
4    "@type": [
5        "MeasurementSet",
6        "FileSet",
7        "Item"
8    ],
9    "accession": "IGVFDS9493HAGQ",
10    "aliases": [
11        "buenrostro-bernstein:scRNA Lib 382"
12    ],
13    "assay_term": {
14        "@id": "/assay-terms/OBI_0002631/",
15        "assay_slims": [
16            "gene expression"
17        ],
18        "status": "released",
19        "term_name": "single-cell RNA sequencing assay"
20    },
21    "audit": {
22        "INTERNAL_ACTION": [
23            {
24                "category": "missing publication",
25                "detail": "In vitro system [IGVFSM7848MXIA](/in-vitro-systems/IGVFSM7848MXIA/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
26                "level": 30,
27                "level_name": "INTERNAL_ACTION",
28                "name": "audit_sample_missing_publication",
29                "path": "/in-vitro-systems/IGVFSM7848MXIA/"
30            },
31            {
32                "category": "missing publication",
33                "detail": "Measurement set [IGVFDS9493HAGQ](/measurement-sets/IGVFDS9493HAGQ/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
34                "level": 30,
35                "level_name": "INTERNAL_ACTION",
36                "name": "audit_file_set_missing_publication",
37                "path": "/measurement-sets/IGVFDS9493HAGQ/"
38            },
39            {
40                "category": "mismatched status",
41                "detail": "Released measurement set [IGVFDS9493HAGQ](/measurement-sets/IGVFDS9493HAGQ/) has in progress subobject tabular file [IGVFFI1312HTQX](/tabular-files/IGVFFI1312HTQX/).",
42                "level": 30,
43                "level_name": "INTERNAL_ACTION",
44                "name": "audit_item_status",
45                "path": "/measurement-sets/IGVFDS9493HAGQ/"
46            },
47            {
48                "category": "mismatched status",
49                "detail": "Released measurement set [IGVFDS9493HAGQ](/measurement-sets/IGVFDS9493HAGQ/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
50                "level": 30,
51                "level_name": "INTERNAL_ACTION",
52                "name": "audit_item_status",
53                "path": "/measurement-sets/IGVFDS9493HAGQ/"
54            }
55        ],
56        "NOT_COMPLIANT": [
57            {
58                "category": "missing strand specificity",
59                "detail": "Measurement set [IGVFDS9493HAGQ](/measurement-sets/IGVFDS9493HAGQ/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
60                "level": 50,
61                "level_name": "NOT_COMPLIANT",
62                "name": "audit_missing_strand_specificity",
63                "path": "/measurement-sets/IGVFDS9493HAGQ/"
64            }
65        ]
66    },
67    "award": {
68        "@id": "/awards/HG011986/",
69        "component": "mapping",
70        "contact_pi": {
71            "@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
72            "title": "Jason Buenrostro"
73        },
74        "title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
75    },
76    "control_for": [],
77    "controlled_access": true,
78    "creation_timestamp": "2024-08-20T14:59:53.099563+00:00",
79    "data_use_limitation_summaries": [
80        "GRU"
81    ],
82    "donors": [
83        {
84            "@id": "/human-donors/IGVFDO4283QEWA/",
85            "accession": "IGVFDO4283QEWA",
86            "aliases": [
87                "buenrostro-bernstein:Donor 1974"
88            ],
89            "sex": "unspecified",
90            "status": "released",
91            "taxa": "Homo sapiens"
92        },
93        {
94            "@id": "/human-donors/IGVFDO4207CTJX/",
95            "accession": "IGVFDO4207CTJX",
96            "aliases": [
97                "buenrostro-bernstein:Donor 1923"
98            ],
99            "sex": "unspecified",
100            "status": "released",
101            "taxa": "Homo sapiens"
102        },
103        {
104            "@id": "/human-donors/IGVFDO9115TZAP/",
105            "accession": "IGVFDO9115TZAP",
106            "aliases": [
107                "buenrostro-bernstein:Donor 1766"
108            ],
109            "sex": "unspecified",
110            "status": "released",
111            "taxa": "Homo sapiens"
112        },
113        {
114            "@id": "/human-donors/IGVFDO5859XGBW/",
115            "accession": "IGVFDO5859XGBW",
116            "aliases": [
117                "buenrostro-bernstein:Donor 1971"
118            ],
119            "sex": "unspecified",
120            "status": "released",
121            "taxa": "Homo sapiens"
122        },
123        {
124            "@id": "/human-donors/IGVFDO9956LYMG/",
125            "accession": "IGVFDO9956LYMG",
126            "aliases": [
127                "buenrostro-bernstein:Donor 1794"
128            ],
129            "sex": "unspecified",
130            "status": "released",
131            "taxa": "Homo sapiens"
132        },
133        {
134            "@id": "/human-donors/IGVFDO6331OQFD/",
135            "accession": "IGVFDO6331OQFD",
136            "aliases": [
137                "buenrostro-bernstein:Donor 1920"
138            ],
139            "sex": "unspecified",
140            "status": "released",
141            "taxa": "Homo sapiens"
142        },
143        {
144            "@id": "/human-donors/IGVFDO2605TXDO/",
145            "accession": "IGVFDO2605TXDO",
146            "aliases": [
147                "buenrostro-bernstein:Donor 1787"
148            ],
149            "sex": "unspecified",
150            "status": "released",
151            "taxa": "Homo sapiens"
152        },
153        {
154            "@id": "/human-donors/IGVFDO3082FYQJ/",
155            "accession": "IGVFDO3082FYQJ",
156            "aliases": [
157                "buenrostro-bernstein:Donor 1972"
158            ],
159            "sex": "unspecified",
160            "status": "released",
161            "taxa": "Homo sapiens"
162        },
163        {
164            "@id": "/human-donors/IGVFDO8124AYVF/",
165            "accession": "IGVFDO8124AYVF",
166            "aliases": [
167                "buenrostro-bernstein:Donor 1740"
168            ],
169            "sex": "unspecified",
170            "status": "released",
171            "taxa": "Homo sapiens"
172        },
173        {
174            "@id": "/human-donors/IGVFDO4924NHKE/",
175            "accession": "IGVFDO4924NHKE",
176            "aliases": [
177                "buenrostro-bernstein:Donor 1970"
178            ],
179            "sex": "unspecified",
180            "status": "released",
181            "taxa": "Homo sapiens"
182        },
183        {
184            "@id": "/human-donors/IGVFDO1255IJEH/",
185            "accession": "IGVFDO1255IJEH",
186            "aliases": [
187                "buenrostro-bernstein:Donor 1975"
188            ],
189            "sex": "unspecified",
190            "status": "released",
191            "taxa": "Homo sapiens"
192        },
193        {
194            "@id": "/human-donors/IGVFDO5150ROJL/",
195            "accession": "IGVFDO5150ROJL",
196            "aliases": [
197                "buenrostro-bernstein:Donor 1900"
198            ],
199            "sex": "unspecified",
200            "status": "released",
201            "taxa": "Homo sapiens"
202        },
203        {
204            "@id": "/human-donors/IGVFDO3154SUBV/",
205            "accession": "IGVFDO3154SUBV",
206            "aliases": [
207                "buenrostro-bernstein:Donor 1746"
208            ],
209            "sex": "unspecified",
210            "status": "released",
211            "taxa": "Homo sapiens"
212        },
213        {
214            "@id": "/human-donors/IGVFDO8776OLQD/",
215            "accession": "IGVFDO8776OLQD",
216            "aliases": [
217                "buenrostro-bernstein:Donor 1744"
218            ],
219            "sex": "unspecified",
220            "status": "released",
221            "taxa": "Homo sapiens"
222        },
223        {
224            "@id": "/human-donors/IGVFDO1512EGWF/",
225            "accession": "IGVFDO1512EGWF",
226            "aliases": [
227                "buenrostro-bernstein:Donor 1981"
228            ],
229            "sex": "unspecified",
230            "status": "released",
231            "taxa": "Homo sapiens"
232        },
233        {
234            "@id": "/human-donors/IGVFDO8195QBTP/",
235            "accession": "IGVFDO8195QBTP",
236            "aliases": [
237                "buenrostro-bernstein:Donor 1958"
238            ],
239            "sex": "unspecified",
240            "status": "released",
241            "taxa": "Homo sapiens"
242        },
243        {
244            "@id": "/human-donors/IGVFDO5934RGQS/",
245            "accession": "IGVFDO5934RGQS",
246            "aliases": [
247                "buenrostro-bernstein:Donor 1956"
248            ],
249            "sex": "unspecified",
250            "status": "released",
251            "taxa": "Homo sapiens"
252        },
253        {
254            "@id": "/human-donors/IGVFDO9835EEAJ/",
255            "accession": "IGVFDO9835EEAJ",
256            "aliases": [
257                "buenrostro-bernstein:Donor 1951"
258            ],
259            "sex": "unspecified",
260            "status": "released",
261            "taxa": "Homo sapiens"
262        },
263        {
264            "@id": "/human-donors/IGVFDO9261YIGN/",
265            "accession": "IGVFDO9261YIGN",
266            "aliases": [
267                "buenrostro-bernstein:Donor 1930"
268            ],
269            "sex": "unspecified",
270            "status": "released",
271            "taxa": "Homo sapiens"
272        },
273        {
274            "@id": "/human-donors/IGVFDO9770WYQG/",
275            "accession": "IGVFDO9770WYQG",
276            "aliases": [
277                "buenrostro-bernstein:Donor 1966"
278            ],
279            "sex": "unspecified",
280            "status": "released",
281            "taxa": "Homo sapiens"
282        },
283        {
284            "@id": "/human-donors/IGVFDO6183QMMP/",
285            "accession": "IGVFDO6183QMMP",
286            "aliases": [
287                "buenrostro-bernstein:Donor 1788"
288            ],
289            "sex": "unspecified",
290            "status": "released",
291            "taxa": "Homo sapiens"
292        },
293        {
294            "@id": "/human-donors/IGVFDO6704QEET/",
295            "accession": "IGVFDO6704QEET",
296            "aliases": [
297                "buenrostro-bernstein:Donor 1917"
298            ],
299            "sex": "unspecified",
300            "status": "released",
301            "taxa": "Homo sapiens"
302        },
303        {
304            "@id": "/human-donors/IGVFDO9907ZZVD/",
305            "accession": "IGVFDO9907ZZVD",
306            "aliases": [
307                "buenrostro-bernstein:Donor 1902"
308            ],
309            "sex": "unspecified",
310            "status": "released",
311            "taxa": "Homo sapiens"
312        },
313        {
314            "@id": "/human-donors/IGVFDO8979DYIF/",
315            "accession": "IGVFDO8979DYIF",
316            "aliases": [
317                "buenrostro-bernstein:Donor 1743"
318            ],
319            "sex": "unspecified",
320            "status": "released",
321            "taxa": "Homo sapiens"
322        },
323        {
324            "@id": "/human-donors/IGVFDO9561MSAD/",
325            "accession": "IGVFDO9561MSAD",
326            "aliases": [
327                "buenrostro-bernstein:Donor 1976"
328            ],
329            "sex": "unspecified",
330            "status": "released",
331            "taxa": "Homo sapiens"
332        },
333        {
334            "@id": "/human-donors/IGVFDO6064BKKJ/",
335            "accession": "IGVFDO6064BKKJ",
336            "aliases": [
337                "buenrostro-bernstein:Donor 1980"
338            ],
339            "sex": "unspecified",
340            "status": "released",
341            "taxa": "Homo sapiens"
342        },
343        {
344            "@id": "/human-donors/IGVFDO4449DKJZ/",
345            "accession": "IGVFDO4449DKJZ",
346            "aliases": [
347                "buenrostro-bernstein:Donor 1919"
348            ],
349            "sex": "unspecified",
350            "status": "released",
351            "taxa": "Homo sapiens"
352        },
353        {
354            "@id": "/human-donors/IGVFDO4761JIBM/",
355            "accession": "IGVFDO4761JIBM",
356            "aliases": [
357                "buenrostro-bernstein:Donor 1960"
358            ],
359            "sex": "unspecified",
360            "status": "released",
361            "taxa": "Homo sapiens"
362        },
363        {
364            "@id": "/human-donors/IGVFDO5669IKNL/",
365            "accession": "IGVFDO5669IKNL",
366            "aliases": [
367                "buenrostro-bernstein:Donor 1950"
368            ],
369            "sex": "unspecified",
370            "status": "released",
371            "taxa": "Homo sapiens"
372        },
373        {
374            "@id": "/human-donors/IGVFDO3469EFJR/",
375            "accession": "IGVFDO3469EFJR",
376            "aliases": [
377                "buenrostro-bernstein:Donor 1741"
378            ],
379            "sex": "unspecified",
380            "status": "released",
381            "taxa": "Homo sapiens"
382        },
383        {
384            "@id": "/human-donors/IGVFDO7991MYZO/",
385            "accession": "IGVFDO7991MYZO",
386            "aliases": [
387                "buenrostro-bernstein:Donor 1978"
388            ],
389            "sex": "unspecified",
390            "status": "released",
391            "taxa": "Homo sapiens"
392        },
393        {
394            "@id": "/human-donors/IGVFDO2967OWUY/",
395            "accession": "IGVFDO2967OWUY",
396            "aliases": [
397                "buenrostro-bernstein:Donor 1989"
398            ],
399            "sex": "unspecified",
400            "status": "released",
401            "taxa": "Homo sapiens"
402        },
403        {
404            "@id": "/human-donors/IGVFDO0417TJMX/",
405            "accession": "IGVFDO0417TJMX",
406            "aliases": [
407                "buenrostro-bernstein:Donor 1907"
408            ],
409            "sex": "unspecified",
410            "status": "released",
411            "taxa": "Homo sapiens"
412        },
413        {
414            "@id": "/human-donors/IGVFDO0123YZDN/",
415            "accession": "IGVFDO0123YZDN",
416            "aliases": [
417                "buenrostro-bernstein:Donor 1943"
418            ],
419            "sex": "unspecified",
420            "status": "released",
421            "taxa": "Homo sapiens"
422        },
423        {
424            "@id": "/human-donors/IGVFDO5885PQJM/",
425            "accession": "IGVFDO5885PQJM",
426            "aliases": [
427                "buenrostro-bernstein:Donor 1658"
428            ],
429            "sex": "unspecified",
430            "status": "released",
431            "taxa": "Homo sapiens"
432        },
433        {
434            "@id": "/human-donors/IGVFDO3652LJLN/",
435            "accession": "IGVFDO3652LJLN",
436            "aliases": [
437                "buenrostro-bernstein:Donor 1932"
438            ],
439            "sex": "unspecified",
440            "status": "released",
441            "taxa": "Homo sapiens"
442        },
443        {
444            "@id": "/human-donors/IGVFDO6296JPHU/",
445            "accession": "IGVFDO6296JPHU",
446            "aliases": [
447                "buenrostro-bernstein:Donor 1918"
448            ],
449            "sex": "unspecified",
450            "status": "released",
451            "taxa": "Homo sapiens"
452        },
453        {
454            "@id": "/human-donors/IGVFDO8459PAOB/",
455            "accession": "IGVFDO8459PAOB",
456            "aliases": [
457                "buenrostro-bernstein:Donor 1953"
458            ],
459            "sex": "unspecified",
460            "status": "released",
461            "taxa": "Homo sapiens"
462        },
463        {
464            "@id": "/human-donors/IGVFDO0508COBR/",
465            "accession": "IGVFDO0508COBR",
466            "aliases": [
467                "buenrostro-bernstein:Donor 1963"
468            ],
469            "sex": "unspecified",
470            "status": "released",
471            "taxa": "Homo sapiens"
472        },
473        {
474            "@id": "/human-donors/IGVFDO8033HKMP/",
475            "accession": "IGVFDO8033HKMP",
476            "aliases": [
477                "buenrostro-bernstein:Donor 1947"
478            ],
479            "sex": "unspecified",
480            "status": "released",
481            "taxa": "Homo sapiens"
482        },
483        {
484            "@id": "/human-donors/IGVFDO0948FTCE/",
485            "accession": "IGVFDO0948FTCE",
486            "aliases": [
487                "buenrostro-bernstein:Donor 1952"
488            ],
489            "sex": "unspecified",
490            "status": "released",
491            "taxa": "Homo sapiens"
492        },
493        {
494            "@id": "/human-donors/IGVFDO0211CZWE/",
495            "accession": "IGVFDO0211CZWE",
496            "aliases": [
497                "buenrostro-bernstein:Donor 1909"
498            ],
499            "sex": "unspecified",
500            "status": "released",
501            "taxa": "Homo sapiens"
502        },
503        {
504            "@id": "/human-donors/IGVFDO8663MIYC/",
505            "accession": "IGVFDO8663MIYC",
506            "aliases": [
507                "buenrostro-bernstein:Donor 1925"
508            ],
509            "sex": "unspecified",
510            "status": "released",
511            "taxa": "Homo sapiens"
512        },
513        {
514            "@id": "/human-donors/IGVFDO1533MKVB/",
515            "accession": "IGVFDO1533MKVB",
516            "aliases": [
517                "buenrostro-bernstein:Donor 1739"
518            ],
519            "sex": "unspecified",
520            "status": "released",
521            "taxa": "Homo sapiens"
522        },
523        {
524            "@id": "/human-donors/IGVFDO2649JQXX/",
525            "accession": "IGVFDO2649JQXX",
526            "aliases": [
527                "buenrostro-bernstein:Donor 1659"
528            ],
529            "sex": "unspecified",
530            "status": "released",
531            "taxa": "Homo sapiens"
532        },
533        {
534            "@id": "/human-donors/IGVFDO2217VSIY/",
535            "accession": "IGVFDO2217VSIY",
536            "aliases": [
537                "buenrostro-bernstein:Donor 1955"
538            ],
539            "sex": "unspecified",
540            "status": "released",
541            "taxa": "Homo sapiens"
542        },
543        {
544            "@id": "/human-donors/IGVFDO3006ZNMC/",
545            "accession": "IGVFDO3006ZNMC",
546            "aliases": [
547                "buenrostro-bernstein:Donor 1928"
548            ],
549            "sex": "unspecified",
550            "status": "released",
551            "taxa": "Homo sapiens"
552        },
553        {
554            "@id": "/human-donors/IGVFDO3010FULG/",
555            "accession": "IGVFDO3010FULG",
556            "aliases": [
557                "buenrostro-bernstein:Donor 1929"
558            ],
559            "sex": "unspecified",
560            "status": "released",
561            "taxa": "Homo sapiens"
562        },
563        {
564            "@id": "/human-donors/IGVFDO0279GJBF/",
565            "accession": "IGVFDO0279GJBF",
566            "aliases": [
567                "buenrostro-bernstein:Donor 1937"
568            ],
569            "sex": "unspecified",
570            "status": "released",
571            "taxa": "Homo sapiens"
572        },
573        {
574            "@id": "/human-donors/IGVFDO7506JTFC/",
575            "accession": "IGVFDO7506JTFC",
576            "aliases": [
577                "buenrostro-bernstein:Donor 1931"
578            ],
579            "sex": "unspecified",
580            "status": "released",
581            "taxa": "Homo sapiens"
582        },
583        {
584            "@id": "/human-donors/IGVFDO3560WDAC/",
585            "accession": "IGVFDO3560WDAC",
586            "aliases": [
587                "buenrostro-bernstein:Donor 1940"
588            ],
589            "sex": "unspecified",
590            "status": "released",
591            "taxa": "Homo sapiens"
592        },
593        {
594            "@id": "/human-donors/IGVFDO9815AMKV/",
595            "accession": "IGVFDO9815AMKV",
596            "aliases": [
597                "buenrostro-bernstein:Donor 1926"
598            ],
599            "sex": "unspecified",
600            "status": "released",
601            "taxa": "Homo sapiens"
602        },
603        {
604            "@id": "/human-donors/IGVFDO3701XUXY/",
605            "accession": "IGVFDO3701XUXY",
606            "aliases": [
607                "buenrostro-bernstein:Donor 1959"
608            ],
609            "sex": "unspecified",
610            "status": "released",
611            "taxa": "Homo sapiens"
612        },
613        {
614            "@id": "/human-donors/IGVFDO1467HGMO/",
615            "accession": "IGVFDO1467HGMO",
616            "aliases": [
617                "buenrostro-bernstein:Donor 1969"
618            ],
619            "sex": "unspecified",
620            "status": "released",
621            "taxa": "Homo sapiens"
622        },
623        {
624            "@id": "/human-donors/IGVFDO2540COFN/",
625            "accession": "IGVFDO2540COFN",
626            "aliases": [
627                "buenrostro-bernstein:Donor 1912"
628            ],
629            "sex": "unspecified",
630            "status": "released",
631            "taxa": "Homo sapiens"
632        },
633        {
634            "@id": "/human-donors/IGVFDO1417AZJE/",
635            "accession": "IGVFDO1417AZJE",
636            "aliases": [
637                "buenrostro-bernstein:Donor 1986"
638            ],
639            "sex": "unspecified",
640            "status": "released",
641            "taxa": "Homo sapiens"
642        },
643        {
644            "@id": "/human-donors/IGVFDO5473XXFQ/",
645            "accession": "IGVFDO5473XXFQ",
646            "aliases": [
647                "buenrostro-bernstein:Donor 1927"
648            ],
649            "sex": "unspecified",
650            "status": "released",
651            "taxa": "Homo sapiens"
652        },
653        {
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1247        "title": "Jason Buenrostro, Broad"
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1256    "protocols": [
1257        "https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw"
1258    ],
1259    "related_multiome_datasets": [
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1272                "Biosample",
1273                "Sample",
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1277            "aliases": [
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1281            "classifications": [
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1320                },
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1327                },
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1341                },
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1346                    "data_use_limitation": "GRU",
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1348                },
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1355                },
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1362                },
1363                {
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1369                },
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1376                },
1377                {
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1379                    "certificate_identifier": "IP113-13",
1380                    "controlled_access": true,
1381                    "data_use_limitation": "GRU",
1382                    "status": "released"
1383                },
1384                {
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1387                    "controlled_access": true,
1388                    "data_use_limitation": "GRU",
1389                    "status": "released"
1390                },
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1393                    "certificate_identifier": "IP113-16",
1394                    "controlled_access": true,
1395                    "data_use_limitation": "GRU",
1396                    "status": "released"
1397                },
1398                {
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1402                    "data_use_limitation": "GRU",
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1404                },
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1409                    "data_use_limitation": "GRU",
1410                    "status": "released"
1411                },
1412                {
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1416                    "data_use_limitation": "GRU",
1417                    "status": "released"
1418                },
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1425                }
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1429                    "@id": "/sample-terms/EFO_0004905/",
1430                    "@type": [
1431                        "SampleTerm",
1432                        "OntologyTerm",
1433                        "Item"
1434                    ],
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1437                    "term_name": "induced pluripotent stem cell"
1438                }
1439            ],
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1441            "summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to neural progenitor cell for 5 days (cellular sub pool: SS-PKR 206)",
1442            "targeted_sample_term": {
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1444                "status": "released",
1445                "term_name": "neural progenitor cell"
1446            },
1447            "taxa": "Homo sapiens"
1448        }
1449    ],
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1451    "status": "released",
1452    "submitted_by": {
1453        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
1454        "title": "Siddarth Wekhande"
1455    },
1456    "submitted_files_timestamp": "2024-08-20T15:18:26.999743+00:00",
1457    "summary": "single-cell RNA sequencing assay (SHARE-seq)",
1458    "uuid": "5621462e-41b3-4842-b962-036d084abb30"
1459}