{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS9381QGYL/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS9381QGYL",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS9381QGYL](/measurement-sets/IGVFDS9381QGYL/) has sequence file(s) [IGVFFI6632MKGP](/sequence-files/IGVFFI6632MKGP/), [IGVFFI7110RRRE](/sequence-files/IGVFFI7110RRRE/), [IGVFFI6966HDZC](/sequence-files/IGVFFI6966HDZC/), [IGVFFI9484UUOC](/sequence-files/IGVFFI9484UUOC/), [IGVFFI9524QHTO](/sequence-files/IGVFFI9524QHTO/), [IGVFFI6494YIJY](/sequence-files/IGVFFI6494YIJY/), [IGVFFI3640WYRU](/sequence-files/IGVFFI3640WYRU/), [IGVFFI8260HFWJ](/sequence-files/IGVFFI8260HFWJ/), [IGVFFI1366FCMB](/sequence-files/IGVFFI1366FCMB/), [IGVFFI5420TYCM](/sequence-files/IGVFFI5420TYCM/), [IGVFFI9725WUTH](/sequence-files/IGVFFI9725WUTH/), [IGVFFI2781TBIG](/sequence-files/IGVFFI2781TBIG/), [IGVFFI6983PXUZ](/sequence-files/IGVFFI6983PXUZ/), [IGVFFI0206BXVL](/sequence-files/IGVFFI0206BXVL/), [IGVFFI3338KEAW](/sequence-files/IGVFFI3338KEAW/), [IGVFFI1585QWET](/sequence-files/IGVFFI1585QWET/), [IGVFFI4270YUDC](/sequence-files/IGVFFI4270YUDC/), [IGVFFI6047UCAM](/sequence-files/IGVFFI6047UCAM/), [IGVFFI3535BCRZ](/sequence-files/IGVFFI3535BCRZ/), [IGVFFI3620RRIV](/sequence-files/IGVFFI3620RRIV/), [IGVFFI0614TWOQ](/sequence-files/IGVFFI0614TWOQ/), [IGVFFI8362EEHI](/sequence-files/IGVFFI8362EEHI/), [IGVFFI1966ORWS](/sequence-files/IGVFFI1966ORWS/), [IGVFFI1687AQIM](/sequence-files/IGVFFI1687AQIM/), [IGVFFI3879ALXZ](/sequence-files/IGVFFI3879ALXZ/), [IGVFFI6748CQCZ](/sequence-files/IGVFFI6748CQCZ/), [IGVFFI8012RSML](/sequence-files/IGVFFI8012RSML/), [IGVFFI9808OVLJ](/sequence-files/IGVFFI9808OVLJ/), [IGVFFI5167VAFJ](/sequence-files/IGVFFI5167VAFJ/), [IGVFFI9402KQMY](/sequence-files/IGVFFI9402KQMY/), [IGVFFI4699UFBK](/sequence-files/IGVFFI4699UFBK/), [IGVFFI2924HYNO](/sequence-files/IGVFFI2924HYNO/), [IGVFFI8714LANI](/sequence-files/IGVFFI8714LANI/), [IGVFFI5356GWER](/sequence-files/IGVFFI5356GWER/), [IGVFFI5478QGDN](/sequence-files/IGVFFI5478QGDN/), [IGVFFI0634IPML](/sequence-files/IGVFFI0634IPML/), [IGVFFI8624OQLF](/sequence-files/IGVFFI8624OQLF/), [IGVFFI7389SJVG](/sequence-files/IGVFFI7389SJVG/), [IGVFFI1960ESWO](/sequence-files/IGVFFI1960ESWO/), [IGVFFI9497BBLJ](/sequence-files/IGVFFI9497BBLJ/), [IGVFFI4608HSLS](/sequence-files/IGVFFI4608HSLS/), [IGVFFI4852GHJP](/sequence-files/IGVFFI4852GHJP/), [IGVFFI4528QCPU](/sequence-files/IGVFFI4528QCPU/), [IGVFFI7577TTSA](/sequence-files/IGVFFI7577TTSA/), [IGVFFI0346PFTX](/sequence-files/IGVFFI0346PFTX/), [IGVFFI4969BYGH](/sequence-files/IGVFFI4969BYGH/), [IGVFFI4287YWHI](/sequence-files/IGVFFI4287YWHI/), [IGVFFI8386TEDH](/sequence-files/IGVFFI8386TEDH/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS9381QGYL/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS9381QGYL](/measurement-sets/IGVFDS9381QGYL/) has sequence file(s): [IGVFFI6632MKGP](/sequence-files/IGVFFI6632MKGP/), [IGVFFI7110RRRE](/sequence-files/IGVFFI7110RRRE/), [IGVFFI6966HDZC](/sequence-files/IGVFFI6966HDZC/), [IGVFFI9484UUOC](/sequence-files/IGVFFI9484UUOC/), [IGVFFI9524QHTO](/sequence-files/IGVFFI9524QHTO/), [IGVFFI6494YIJY](/sequence-files/IGVFFI6494YIJY/), [IGVFFI3640WYRU](/sequence-files/IGVFFI3640WYRU/), [IGVFFI8260HFWJ](/sequence-files/IGVFFI8260HFWJ/), [IGVFFI1366FCMB](/sequence-files/IGVFFI1366FCMB/), [IGVFFI5420TYCM](/sequence-files/IGVFFI5420TYCM/), [IGVFFI9725WUTH](/sequence-files/IGVFFI9725WUTH/), [IGVFFI2781TBIG](/sequence-files/IGVFFI2781TBIG/), [IGVFFI6983PXUZ](/sequence-files/IGVFFI6983PXUZ/), [IGVFFI0206BXVL](/sequence-files/IGVFFI0206BXVL/), [IGVFFI3338KEAW](/sequence-files/IGVFFI3338KEAW/), [IGVFFI1585QWET](/sequence-files/IGVFFI1585QWET/), [IGVFFI4270YUDC](/sequence-files/IGVFFI4270YUDC/), [IGVFFI6047UCAM](/sequence-files/IGVFFI6047UCAM/), [IGVFFI3535BCRZ](/sequence-files/IGVFFI3535BCRZ/), [IGVFFI3620RRIV](/sequence-files/IGVFFI3620RRIV/), [IGVFFI0614TWOQ](/sequence-files/IGVFFI0614TWOQ/), [IGVFFI8362EEHI](/sequence-files/IGVFFI8362EEHI/), [IGVFFI1966ORWS](/sequence-files/IGVFFI1966ORWS/), [IGVFFI1687AQIM](/sequence-files/IGVFFI1687AQIM/), [IGVFFI3879ALXZ](/sequence-files/IGVFFI3879ALXZ/), [IGVFFI6748CQCZ](/sequence-files/IGVFFI6748CQCZ/), [IGVFFI8012RSML](/sequence-files/IGVFFI8012RSML/), [IGVFFI9808OVLJ](/sequence-files/IGVFFI9808OVLJ/), [IGVFFI5167VAFJ](/sequence-files/IGVFFI5167VAFJ/), [IGVFFI9402KQMY](/sequence-files/IGVFFI9402KQMY/), [IGVFFI4699UFBK](/sequence-files/IGVFFI4699UFBK/), [IGVFFI2924HYNO](/sequence-files/IGVFFI2924HYNO/), [IGVFFI8714LANI](/sequence-files/IGVFFI8714LANI/), [IGVFFI5356GWER](/sequence-files/IGVFFI5356GWER/), [IGVFFI5478QGDN](/sequence-files/IGVFFI5478QGDN/), [IGVFFI0634IPML](/sequence-files/IGVFFI0634IPML/), [IGVFFI8624OQLF](/sequence-files/IGVFFI8624OQLF/), [IGVFFI7389SJVG](/sequence-files/IGVFFI7389SJVG/), [IGVFFI1960ESWO](/sequence-files/IGVFFI1960ESWO/), [IGVFFI9497BBLJ](/sequence-files/IGVFFI9497BBLJ/), [IGVFFI4608HSLS](/sequence-files/IGVFFI4608HSLS/), [IGVFFI4852GHJP](/sequence-files/IGVFFI4852GHJP/), [IGVFFI4528QCPU](/sequence-files/IGVFFI4528QCPU/), [IGVFFI7577TTSA](/sequence-files/IGVFFI7577TTSA/), [IGVFFI0346PFTX](/sequence-files/IGVFFI0346PFTX/), [IGVFFI4969BYGH](/sequence-files/IGVFFI4969BYGH/), [IGVFFI4287YWHI](/sequence-files/IGVFFI4287YWHI/), [IGVFFI8386TEDH](/sequence-files/IGVFFI8386TEDH/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS9381QGYL/"
},
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM2175KOEY](/in-vitro-systems/IGVFSM2175KOEY/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM2175KOEY/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS9381QGYL](/measurement-sets/IGVFDS9381QGYL/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS9381QGYL/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS5128CXIS/",
"accession": "IGVFDS5128CXIS",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-THP1-PE2_Exp4_NegControl_AmpliconSequencing"
],
"status": "released"
}
],
"control_for": [],
"creation_timestamp": "2023-12-13T08:01:36.894323+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO7359LVPI/",
"accession": "IGVFDO7359LVPI",
"aliases": [
"igvf:donor_of_THP1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI6632MKGP/",
"accession": "IGVFFI6632MKGP",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep1_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:24:24.752138+00:00",
"file_format": "fastq",
"file_size": 13825567,
"href": "/sequence-files/IGVFFI6632MKGP/@@download/IGVFFI6632MKGP.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/ba9a8b9a-a435-444f-96fb-0d88805db9bc/IGVFFI6632MKGP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep1_S25_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7110RRRE/",
"accession": "IGVFFI7110RRRE",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep6_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:07:51.150121+00:00",
"file_format": "fastq",
"file_size": 2498491,
"href": "/sequence-files/IGVFFI7110RRRE/@@download/IGVFFI7110RRRE.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/247a3d79-081a-4b0c-9b62-411b337fbdf9/IGVFFI7110RRRE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep6_S30_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6966HDZC/",
"accession": "IGVFFI6966HDZC",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep10_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:06:45.703257+00:00",
"file_format": "fastq",
"file_size": 2300681,
"href": "/sequence-files/IGVFFI6966HDZC/@@download/IGVFFI6966HDZC.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/31752f55-a42d-49d0-8ffe-3dad97da6db3/IGVFFI6966HDZC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep10_S34_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9484UUOC/",
"accession": "IGVFFI9484UUOC",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep5_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:07:13.078287+00:00",
"file_format": "fastq",
"file_size": 2412823,
"href": "/sequence-files/IGVFFI9484UUOC/@@download/IGVFFI9484UUOC.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/292e30a3-4749-4a65-ae61-c54191f88bfb/IGVFFI9484UUOC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep5_S29_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9524QHTO/",
"accession": "IGVFFI9524QHTO",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep11_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:31:45.703866+00:00",
"file_format": "fastq",
"file_size": 12852774,
"href": "/sequence-files/IGVFFI9524QHTO/@@download/IGVFFI9524QHTO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/8d599612-b2d9-44b6-83ae-98f665cc88f0/IGVFFI9524QHTO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep11_S35_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6494YIJY/",
"accession": "IGVFFI6494YIJY",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep9_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:06:07.193344+00:00",
"file_format": "fastq",
"file_size": 2337688,
"href": "/sequence-files/IGVFFI6494YIJY/@@download/IGVFFI6494YIJY.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/50bc289d-e4f5-4df4-8ceb-ca9644ecd3e6/IGVFFI6494YIJY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep9_S33_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3640WYRU/",
"accession": "IGVFFI3640WYRU",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep11_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:11:06.351714+00:00",
"file_format": "fastq",
"file_size": 2378081,
"href": "/sequence-files/IGVFFI3640WYRU/@@download/IGVFFI3640WYRU.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/ea309d7e-537e-4fbc-b1e0-2b3711643eb0/IGVFFI3640WYRU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep11_S35_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8260HFWJ/",
"accession": "IGVFFI8260HFWJ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep8_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T08:22:10.922381+00:00",
"file_format": "fastq",
"file_size": 10279156,
"href": "/sequence-files/IGVFFI8260HFWJ/@@download/IGVFFI8260HFWJ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/0a94d03d-e956-4c29-91a8-5d4867f8dc28/IGVFFI8260HFWJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep8_S32_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1366FCMB/",
"accession": "IGVFFI1366FCMB",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep10_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:31:06.149535+00:00",
"file_format": "fastq",
"file_size": 12893481,
"href": "/sequence-files/IGVFFI1366FCMB/@@download/IGVFFI1366FCMB.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/a2782bac-6ae8-4473-be13-a1f5defa1105/IGVFFI1366FCMB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep10_S34_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5420TYCM/",
"accession": "IGVFFI5420TYCM",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep1_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:04:04.321694+00:00",
"file_format": "fastq",
"file_size": 2507343,
"href": "/sequence-files/IGVFFI5420TYCM/@@download/IGVFFI5420TYCM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/32611396-72b3-4b32-ad54-59d4fd758528/IGVFFI5420TYCM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep1_S25_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9725WUTH/",
"accession": "IGVFFI9725WUTH",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T08:16:46.764673+00:00",
"file_format": "fastq",
"file_size": 10684214,
"href": "/sequence-files/IGVFFI9725WUTH/@@download/IGVFFI9725WUTH.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/9ef895bd-fde6-4dc9-9b52-0c5e1a3ac619/IGVFFI9725WUTH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep1_S25_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2781TBIG/",
"accession": "IGVFFI2781TBIG",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep3_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:05:57.520637+00:00",
"file_format": "fastq",
"file_size": 2491675,
"href": "/sequence-files/IGVFFI2781TBIG/@@download/IGVFFI2781TBIG.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/df112b50-e971-47b2-9432-3cbb5f9afa58/IGVFFI2781TBIG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep3_S27_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6983PXUZ/",
"accession": "IGVFFI6983PXUZ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep3_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T08:18:49.007283+00:00",
"file_format": "fastq",
"file_size": 10713305,
"href": "/sequence-files/IGVFFI6983PXUZ/@@download/IGVFFI6983PXUZ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/3ecec503-bd09-481e-9dcf-ab5c5a45d9a0/IGVFFI6983PXUZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep3_S27_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0206BXVL/",
"accession": "IGVFFI0206BXVL",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep2_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:25:25.110239+00:00",
"file_format": "fastq",
"file_size": 13459774,
"href": "/sequence-files/IGVFFI0206BXVL/@@download/IGVFFI0206BXVL.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/1ca2572d-a96a-48c2-a5a9-0316e226327f/IGVFFI0206BXVL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep2_S26_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3338KEAW/",
"accession": "IGVFFI3338KEAW",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep11_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T08:24:12.173046+00:00",
"file_format": "fastq",
"file_size": 10077891,
"href": "/sequence-files/IGVFFI3338KEAW/@@download/IGVFFI3338KEAW.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/8c51e40f-c056-4ee0-bfaf-5fab6d483465/IGVFFI3338KEAW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep11_S35_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1585QWET/",
"accession": "IGVFFI1585QWET",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep12_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:32:25.099877+00:00",
"file_format": "fastq",
"file_size": 12809985,
"href": "/sequence-files/IGVFFI1585QWET/@@download/IGVFFI1585QWET.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/1a7f55a3-4cc4-4d8d-a731-059d1b465ddc/IGVFFI1585QWET.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep12_S36_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4270YUDC/",
"accession": "IGVFFI4270YUDC",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep6_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T08:20:51.171303+00:00",
"file_format": "fastq",
"file_size": 10811133,
"href": "/sequence-files/IGVFFI4270YUDC/@@download/IGVFFI4270YUDC.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/c86e9cbf-41e3-4c14-a498-4707d80c95b9/IGVFFI4270YUDC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep6_S30_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6047UCAM/",
"accession": "IGVFFI6047UCAM",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep6_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:04:13.859661+00:00",
"file_format": "fastq",
"file_size": 2462670,
"href": "/sequence-files/IGVFFI6047UCAM/@@download/IGVFFI6047UCAM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/f415cb01-a6cf-4487-bab8-3c54331634b9/IGVFFI6047UCAM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep6_S30_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3535BCRZ/",
"accession": "IGVFFI3535BCRZ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep12_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:08:01.229600+00:00",
"file_format": "fastq",
"file_size": 2181788,
"href": "/sequence-files/IGVFFI3535BCRZ/@@download/IGVFFI3535BCRZ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/4a9ffeba-0780-4290-a345-6b67d98e35da/IGVFFI3535BCRZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep12_S36_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3620RRIV/",
"accession": "IGVFFI3620RRIV",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep5_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:03:36.063155+00:00",
"file_format": "fastq",
"file_size": 2339951,
"href": "/sequence-files/IGVFFI3620RRIV/@@download/IGVFFI3620RRIV.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/8f28c5a3-0140-4708-a75b-50e5c5b33358/IGVFFI3620RRIV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep5_S29_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0614TWOQ/",
"accession": "IGVFFI0614TWOQ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep3_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:02:17.475779+00:00",
"file_format": "fastq",
"file_size": 2385010,
"href": "/sequence-files/IGVFFI0614TWOQ/@@download/IGVFFI0614TWOQ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/989bd5fd-b317-4d05-8814-9191b1b5788d/IGVFFI0614TWOQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep3_S27_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8362EEHI/",
"accession": "IGVFFI8362EEHI",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep2_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:01:16.944742+00:00",
"file_format": "fastq",
"file_size": 2403005,
"href": "/sequence-files/IGVFFI8362EEHI/@@download/IGVFFI8362EEHI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/fb474412-766e-4555-916b-f5a7a2d6f682/IGVFFI8362EEHI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep2_S26_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1966ORWS/",
"accession": "IGVFFI1966ORWS",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep12_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:11:43.955628+00:00",
"file_format": "fastq",
"file_size": 2311636,
"href": "/sequence-files/IGVFFI1966ORWS/@@download/IGVFFI1966ORWS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/b814946e-fbc9-4610-9d64-a288ee731ec2/IGVFFI1966ORWS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep12_S36_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1687AQIM/",
"accession": "IGVFFI1687AQIM",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep12_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T08:24:52.333359+00:00",
"file_format": "fastq",
"file_size": 9864218,
"href": "/sequence-files/IGVFFI1687AQIM/@@download/IGVFFI1687AQIM.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/a38b4736-4d9d-4064-bfe1-0ed2248b7886/IGVFFI1687AQIM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep12_S36_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3879ALXZ/",
"accession": "IGVFFI3879ALXZ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep10_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:10:28.512297+00:00",
"file_format": "fastq",
"file_size": 2361340,
"href": "/sequence-files/IGVFFI3879ALXZ/@@download/IGVFFI3879ALXZ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/45eacbb2-b8ee-4678-828a-1ea99f9a003d/IGVFFI3879ALXZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep10_S34_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6748CQCZ/",
"accession": "IGVFFI6748CQCZ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep6_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:28:26.728240+00:00",
"file_format": "fastq",
"file_size": 14109480,
"href": "/sequence-files/IGVFFI6748CQCZ/@@download/IGVFFI6748CQCZ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/ef9a179e-2677-4021-8dc9-adbfff7460d6/IGVFFI6748CQCZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep6_S30_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8012RSML/",
"accession": "IGVFFI8012RSML",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep4_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:27:05.522209+00:00",
"file_format": "fastq",
"file_size": 14052364,
"href": "/sequence-files/IGVFFI8012RSML/@@download/IGVFFI8012RSML.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/30ddb2a6-d622-4127-8ca3-861295d4426e/IGVFFI8012RSML.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep4_S28_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9808OVLJ/",
"accession": "IGVFFI9808OVLJ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep7_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:04:51.602339+00:00",
"file_format": "fastq",
"file_size": 2336831,
"href": "/sequence-files/IGVFFI9808OVLJ/@@download/IGVFFI9808OVLJ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/0e155652-486d-4840-88a8-88beb62a3201/IGVFFI9808OVLJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep7_S31_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5167VAFJ/",
"accession": "IGVFFI5167VAFJ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep8_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:29:46.177194+00:00",
"file_format": "fastq",
"file_size": 13270756,
"href": "/sequence-files/IGVFFI5167VAFJ/@@download/IGVFFI5167VAFJ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/d1f6c85a-ca03-407b-858f-e9d82686ef9c/IGVFFI5167VAFJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep8_S32_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9402KQMY/",
"accession": "IGVFFI9402KQMY",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep5_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T08:20:11.170606+00:00",
"file_format": "fastq",
"file_size": 10385105,
"href": "/sequence-files/IGVFFI9402KQMY/@@download/IGVFFI9402KQMY.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/35d39e75-dc66-4869-8c7f-5336d2139207/IGVFFI9402KQMY.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep5_S29_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4699UFBK/",
"accession": "IGVFFI4699UFBK",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep4_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:06:35.511177+00:00",
"file_format": "fastq",
"file_size": 2579874,
"href": "/sequence-files/IGVFFI4699UFBK/@@download/IGVFFI4699UFBK.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/db855dca-8940-407f-b29f-5c0f4f1e44c1/IGVFFI4699UFBK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep4_S28_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2924HYNO/",
"accession": "IGVFFI2924HYNO",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep10_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T08:23:30.699894+00:00",
"file_format": "fastq",
"file_size": 10016824,
"href": "/sequence-files/IGVFFI2924HYNO/@@download/IGVFFI2924HYNO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/4a7452e4-9089-43ed-91c2-2910657b24a7/IGVFFI2924HYNO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep10_S34_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8714LANI/",
"accession": "IGVFFI8714LANI",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep9_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:09:48.773861+00:00",
"file_format": "fastq",
"file_size": 2440499,
"href": "/sequence-files/IGVFFI8714LANI/@@download/IGVFFI8714LANI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/cacd2ed5-d363-4f2b-b52f-fa7e68e8d0ff/IGVFFI8714LANI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep9_S33_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5356GWER/",
"accession": "IGVFFI5356GWER",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep5_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:27:45.925892+00:00",
"file_format": "fastq",
"file_size": 13420427,
"href": "/sequence-files/IGVFFI5356GWER/@@download/IGVFFI5356GWER.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/123fe844-f1bc-4891-be5f-71eaa723fbe3/IGVFFI5356GWER.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep5_S29_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5478QGDN/",
"accession": "IGVFFI5478QGDN",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep7_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:08:32.769483+00:00",
"file_format": "fastq",
"file_size": 2383903,
"href": "/sequence-files/IGVFFI5478QGDN/@@download/IGVFFI5478QGDN.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/0b14f075-a323-4053-823b-99f122867b89/IGVFFI5478QGDN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep7_S31_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0634IPML/",
"accession": "IGVFFI0634IPML",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep7_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:29:06.451535+00:00",
"file_format": "fastq",
"file_size": 13043662,
"href": "/sequence-files/IGVFFI0634IPML/@@download/IGVFFI0634IPML.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/201e6dc8-a4c3-448c-bc92-8a0301752023/IGVFFI0634IPML.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep7_S31_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8624OQLF/",
"accession": "IGVFFI8624OQLF",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep8_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:05:29.366959+00:00",
"file_format": "fastq",
"file_size": 2277795,
"href": "/sequence-files/IGVFFI8624OQLF/@@download/IGVFFI8624OQLF.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/504031ec-aeb4-41ca-bede-411783688938/IGVFFI8624OQLF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep8_S32_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7389SJVG/",
"accession": "IGVFFI7389SJVG",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep1_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:00:19.482090+00:00",
"file_format": "fastq",
"file_size": 2392640,
"href": "/sequence-files/IGVFFI7389SJVG/@@download/IGVFFI7389SJVG.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/4b37c9ae-106e-4ced-8ef4-9ba36df13f64/IGVFFI7389SJVG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep1_S25_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1960ESWO/",
"accession": "IGVFFI1960ESWO",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep9_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:30:26.601812+00:00",
"file_format": "fastq",
"file_size": 13376442,
"href": "/sequence-files/IGVFFI1960ESWO/@@download/IGVFFI1960ESWO.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/3bd600d2-1685-4589-92d6-b899bd5aca1c/IGVFFI1960ESWO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep9_S33_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9497BBLJ/",
"accession": "IGVFFI9497BBLJ",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep11_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:07:23.394663+00:00",
"file_format": "fastq",
"file_size": 2293457,
"href": "/sequence-files/IGVFFI9497BBLJ/@@download/IGVFFI9497BBLJ.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/8bdbe1af-e2e0-4271-a51c-d657c6d71b23/IGVFFI9497BBLJ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep11_S35_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4608HSLS/",
"accession": "IGVFFI4608HSLS",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep9_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T08:22:51.088026+00:00",
"file_format": "fastq",
"file_size": 10385404,
"href": "/sequence-files/IGVFFI4608HSLS/@@download/IGVFFI4608HSLS.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/40cadf72-b36d-4627-9e41-d510e60f220e/IGVFFI4608HSLS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep9_S33_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4852GHJP/",
"accession": "IGVFFI4852GHJP",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep8_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:09:10.721251+00:00",
"file_format": "fastq",
"file_size": 2408846,
"href": "/sequence-files/IGVFFI4852GHJP/@@download/IGVFFI4852GHJP.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/c9059067-c4ec-4e35-a29d-bdd2a8df61e9/IGVFFI4852GHJP.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep8_S32_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4528QCPU/",
"accession": "IGVFFI4528QCPU",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep2_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T08:17:49.317685+00:00",
"file_format": "fastq",
"file_size": 10455935,
"href": "/sequence-files/IGVFFI4528QCPU/@@download/IGVFFI4528QCPU.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/969c3a12-ed31-4d22-9b5b-fd3bc0993738/IGVFFI4528QCPU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep2_S26_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7577TTSA/",
"accession": "IGVFFI7577TTSA",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep4_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T08:19:31.170785+00:00",
"file_format": "fastq",
"file_size": 10951229,
"href": "/sequence-files/IGVFFI7577TTSA/@@download/IGVFFI7577TTSA.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/7d3a7b9c-ba6e-46ad-bcad-39e49cd65db2/IGVFFI7577TTSA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep4_S28_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0346PFTX/",
"accession": "IGVFFI0346PFTX",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep2_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T16:05:00.938633+00:00",
"file_format": "fastq",
"file_size": 2455405,
"href": "/sequence-files/IGVFFI0346PFTX/@@download/IGVFFI0346PFTX.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/db8c34ef-7617-48ed-9447-ad66a7f003e6/IGVFFI0346PFTX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep2_S26_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4969BYGH/",
"accession": "IGVFFI4969BYGH",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep7_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T08:21:31.096804+00:00",
"file_format": "fastq",
"file_size": 10141917,
"href": "/sequence-files/IGVFFI4969BYGH/@@download/IGVFFI4969BYGH.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/babe400c-0b66-47dc-b6d9-62b6b7f87401/IGVFFI4969BYGH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep7_S31_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4287YWHI/",
"accession": "IGVFFI4287YWHI",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep4_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:02:55.062528+00:00",
"file_format": "fastq",
"file_size": 2607116,
"href": "/sequence-files/IGVFFI4287YWHI/@@download/IGVFFI4287YWHI.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/62fb5793-8471-4a61-875b-db285b32e41f/IGVFFI4287YWHI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep4_S28_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8386TEDH/",
"accession": "IGVFFI8386TEDH",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC-PCRrep3_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T09:26:25.611439+00:00",
"file_format": "fastq",
"file_size": 13995649,
"href": "/sequence-files/IGVFFI8386TEDH/@@download/IGVFFI8386TEDH.fastq.gz",
"s3_uri": "s3://igvf-files/2023/12/13/0334cab9-cb6c-4b4a-a5f6-ec98306189ee/IGVFFI8386TEDH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"status": "released",
"term_name": "Illumina NextSeq 550"
},
"status": "released",
"submitted_file_name": "230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinC-PCRrep3_S27_R2_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS4359OODY/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "The readout 2e41e624-f6c7-4f0c-a07e-bc36cefdca39 was removed from this measurement set. This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"release_timestamp": "2023-12-20T23:07:31.364076+00:00",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM2175KOEY/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2175KOEY",
"aliases": [
"jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinC"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS2385DHZO/",
"accession": "IGVFDS2385DHZO",
"file_set_type": "guide library",
"status": "in progress",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "released",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 51-75% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2023-12-13T08:16:46.764673+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "477191d3-b8df-4695-86e6-3899aa507cb0"
}