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MeasurementSet
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IGVFDS9364TNAM
IGVFDS9364TNAM
released
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Description
Colitis_chronic DSS05-DSS-m1,DSS05-DSS-m2; Control DSS05-Control-m3,DSS05-Control-m4
Assay Term
single-cell ATAC-seq
Sample Summaries
Mus musculus C57BL/6J colon cell
Protocols
https://www.protocols.io/view/share-seq-v1-6qpvrdexpgmk/v1
Aliases
buenrostro-bernstein:surya-mouse-colon_mm-set6
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
3 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0602TOGB
fastq
reads
I1
2
Barcode index
IGVFFI0331EHQR
Illumina NovaSeq 6000
1.8 GB
Jason Buenrostro, Broad
validated
IGVFFI1625RYZQ
fastq
reads
R1
2
Read 1
IGVFFI0331EHQR
Illumina NovaSeq 6000
3.4 GB
Jason Buenrostro, Broad
validated
IGVFFI7512KRYI
fastq
reads
R2
2
Read 2
IGVFFI0331EHQR
Illumina NovaSeq 6000
3.5 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM0354RWOF
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
Donors
4 items
Accession
Aliases
Sex
Taxa
IGVFDO0997UHAO
buenrostro-bernstein:surya-DSS05-Control-m3
unspecified
Mus musculus
IGVFDO4795UJTB
buenrostro-bernstein:surya-DSS05-Control-m4
unspecified
Mus musculus
IGVFDO4865EMFK
buenrostro-bernstein:surya-DSS05-DSS-m2
unspecified
Mus musculus
IGVFDO9526OTLM
buenrostro-bernstein:surya-DSS05-DSS-m1
unspecified
Mus musculus
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0237MRDL
AnalysisSet
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq): fragments, sparse gene count matrix
buenrostro-bernstein:surya-mouse-colitis-primary-cell-analysis-set
Jason Buenrostro, Broad
Related Multiome Datasets
5 items
Accession
Type
Summary
Aliases
Lab
IGVFDS3861CXLU
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set5
Jason Buenrostro, Broad
IGVFDS6298OKGJ
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set4
Jason Buenrostro, Broad
IGVFDS6690HJKJ
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set17
Jason Buenrostro, Broad
IGVFDS6729QWDJ
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set18
Jason Buenrostro, Broad
IGVFDS8684IGUT
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:surya-mouse-colon_mm-set16
Jason Buenrostro, Broad