Home

IGVFDS9342OPKS

released
File Set Type
experimental data
Summary
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Assay Term
massively parallel reporter assay
Sample Summaries
  • mouse embryonic stem differentiated cell specimen induced to embryoid body for 16 days, male, Mus musculus WD44 transfected with a reporter library
Protocols
Aliases
jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day16_reads
Publications

Sequencing Results (Illumina)

6 items
Read Names
fastq
reads
R2
1
UMI
HNGFGBGXL
1
131 MB
Jay Shendure, UW
validated
fastq
reads
R2
2
UMI
AAANJV7HV
1
464 MB
Jay Shendure, UW
validated
fastq
reads
R3
2
Barcode reverse
AAANJV7HV
1
562 MB
Jay Shendure, UW
validated
fastq
reads
R3
1
Barcode reverse
HNGFGBGXL
1
380 MB
Jay Shendure, UW
validated
fastq
reads
R1
1
Barcode forward
HNGFGBGXL
1
262 MB
Jay Shendure, UW
validated
fastq
reads
R1
2
Barcode forward
AAANJV7HV
1
551 MB
Jay Shendure, UW
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 16 days, male, Mus musculus WD44 transfected with a reporter library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • jay-shendure:WD44_donor
male
Mus musculus

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
reporter library targeting accessible genome regions in many genomic loci

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
MPRA: element quantifications
  • jay-shendure:analysis_set_scQers_mEBs_bulk
Jay Shendure, UW

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
  • jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day16_reads
Jay Shendure, UW

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW