Home

IGVFDS9328ATOD

preview
This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 33.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell; ... and 18 more samples
Protocols
Aliases
jimmie-ye:XX16-SC3_snATAC

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
R1
247
Read 1
9.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
247
2.0 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
249
Barcode index
4.8 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
248
Read 2
14 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
246
2.0 GB
Jimmie Ye, UCSF
validated
fastq
reads
R3
246
Read 2
14 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
248
Read 1
9.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
248
Barcode index
4.8 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
247
Barcode index
4.9 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
246
Read 1
9.1 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 33.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell; ... and 18 more samples

Donors

20 items
Aliases
  • jimmie-ye:donor_114
female
Homo sapiens
  • jimmie-ye:donor_307
male
Homo sapiens
  • jimmie-ye:donor_302
male
Homo sapiens
  • jimmie-ye:donor_122
male
Homo sapiens
  • jimmie-ye:donor_116
female
Homo sapiens
  • jimmie-ye:donor_208
male
Homo sapiens
  • jimmie-ye:donor_305
female
Homo sapiens
  • jimmie-ye:donor_338
female
Homo sapiens
  • jimmie-ye:donor_182
female
Homo sapiens
  • jimmie-ye:donor_328
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
  • jimmie-ye:XX16-SC3_snRNA
Jimmie Ye, UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Jimmie Ye, UCSF