{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS9218EUHT/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS9218EUHT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS9218EUHT](/measurement-sets/IGVFDS9218EUHT/) has sequence file(s) [IGVFFI7328YPZL](/sequence-files/IGVFFI7328YPZL/), [IGVFFI0438ZRGH](/sequence-files/IGVFFI0438ZRGH/), [IGVFFI3328DDDR](/sequence-files/IGVFFI3328DDDR/), [IGVFFI1125AQON](/sequence-files/IGVFFI1125AQON/), [IGVFFI6701BOGO](/sequence-files/IGVFFI6701BOGO/), [IGVFFI8309EPYT](/sequence-files/IGVFFI8309EPYT/), [IGVFFI4121QQPN](/sequence-files/IGVFFI4121QQPN/), [IGVFFI8927YIGQ](/sequence-files/IGVFFI8927YIGQ/), [IGVFFI3825NAAQ](/sequence-files/IGVFFI3825NAAQ/), [IGVFFI7407RHDK](/sequence-files/IGVFFI7407RHDK/), [IGVFFI0063KOHU](/sequence-files/IGVFFI0063KOHU/), [IGVFFI1859YNNK](/sequence-files/IGVFFI1859YNNK/), [IGVFFI3556JYDE](/sequence-files/IGVFFI3556JYDE/), [IGVFFI9668HUXL](/sequence-files/IGVFFI9668HUXL/), [IGVFFI8711JHMZ](/sequence-files/IGVFFI8711JHMZ/), [IGVFFI2449ODYV](/sequence-files/IGVFFI2449ODYV/), [IGVFFI3543UJOQ](/sequence-files/IGVFFI3543UJOQ/), [IGVFFI7456ORSB](/sequence-files/IGVFFI7456ORSB/), [IGVFFI8940FVEX](/sequence-files/IGVFFI8940FVEX/), [IGVFFI1313PESQ](/sequence-files/IGVFFI1313PESQ/), [IGVFFI2014RTZR](/sequence-files/IGVFFI2014RTZR/), [IGVFFI1342IRHD](/sequence-files/IGVFFI1342IRHD/), [IGVFFI8877OZBZ](/sequence-files/IGVFFI8877OZBZ/), [IGVFFI4317JNQU](/sequence-files/IGVFFI4317JNQU/), [IGVFFI8097YPEG](/sequence-files/IGVFFI8097YPEG/), [IGVFFI0216MMNK](/sequence-files/IGVFFI0216MMNK/), [IGVFFI5513BRNR](/sequence-files/IGVFFI5513BRNR/), [IGVFFI4865PLTX](/sequence-files/IGVFFI4865PLTX/), [IGVFFI3179QQMW](/sequence-files/IGVFFI3179QQMW/), [IGVFFI6935NOCA](/sequence-files/IGVFFI6935NOCA/), [IGVFFI0813NKSM](/sequence-files/IGVFFI0813NKSM/), [IGVFFI4935YMBO](/sequence-files/IGVFFI4935YMBO/), [IGVFFI1425QLSN](/sequence-files/IGVFFI1425QLSN/), [IGVFFI6719CXZL](/sequence-files/IGVFFI6719CXZL/), [IGVFFI7991TUCB](/sequence-files/IGVFFI7991TUCB/), [IGVFFI4639LCKN](/sequence-files/IGVFFI4639LCKN/), [IGVFFI1066CTSU](/sequence-files/IGVFFI1066CTSU/), [IGVFFI5074YOVW](/sequence-files/IGVFFI5074YOVW/), [IGVFFI1222AUAS](/sequence-files/IGVFFI1222AUAS/), [IGVFFI0305ZNME](/sequence-files/IGVFFI0305ZNME/), [IGVFFI4319SJHS](/sequence-files/IGVFFI4319SJHS/), [IGVFFI6727XATW](/sequence-files/IGVFFI6727XATW/), [IGVFFI5974XZKD](/sequence-files/IGVFFI5974XZKD/), [IGVFFI5739ZVWW](/sequence-files/IGVFFI5739ZVWW/), [IGVFFI1978HGBT](/sequence-files/IGVFFI1978HGBT/), [IGVFFI6048PIVE](/sequence-files/IGVFFI6048PIVE/), [IGVFFI8973PNPZ](/sequence-files/IGVFFI8973PNPZ/), [IGVFFI2588NWZQ](/sequence-files/IGVFFI2588NWZQ/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS9218EUHT/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS9218EUHT](/measurement-sets/IGVFDS9218EUHT/) has sequence file(s): [IGVFFI7328YPZL](/sequence-files/IGVFFI7328YPZL/), [IGVFFI0438ZRGH](/sequence-files/IGVFFI0438ZRGH/), [IGVFFI3328DDDR](/sequence-files/IGVFFI3328DDDR/), [IGVFFI1125AQON](/sequence-files/IGVFFI1125AQON/), [IGVFFI6701BOGO](/sequence-files/IGVFFI6701BOGO/), [IGVFFI8309EPYT](/sequence-files/IGVFFI8309EPYT/), [IGVFFI4121QQPN](/sequence-files/IGVFFI4121QQPN/), [IGVFFI8927YIGQ](/sequence-files/IGVFFI8927YIGQ/), [IGVFFI3825NAAQ](/sequence-files/IGVFFI3825NAAQ/), [IGVFFI7407RHDK](/sequence-files/IGVFFI7407RHDK/), [IGVFFI0063KOHU](/sequence-files/IGVFFI0063KOHU/), [IGVFFI1859YNNK](/sequence-files/IGVFFI1859YNNK/), [IGVFFI3556JYDE](/sequence-files/IGVFFI3556JYDE/), [IGVFFI9668HUXL](/sequence-files/IGVFFI9668HUXL/), [IGVFFI8711JHMZ](/sequence-files/IGVFFI8711JHMZ/), [IGVFFI2449ODYV](/sequence-files/IGVFFI2449ODYV/), [IGVFFI3543UJOQ](/sequence-files/IGVFFI3543UJOQ/), [IGVFFI7456ORSB](/sequence-files/IGVFFI7456ORSB/), [IGVFFI8940FVEX](/sequence-files/IGVFFI8940FVEX/), [IGVFFI1313PESQ](/sequence-files/IGVFFI1313PESQ/), [IGVFFI2014RTZR](/sequence-files/IGVFFI2014RTZR/), [IGVFFI1342IRHD](/sequence-files/IGVFFI1342IRHD/), [IGVFFI8877OZBZ](/sequence-files/IGVFFI8877OZBZ/), [IGVFFI4317JNQU](/sequence-files/IGVFFI4317JNQU/), [IGVFFI8097YPEG](/sequence-files/IGVFFI8097YPEG/), [IGVFFI0216MMNK](/sequence-files/IGVFFI0216MMNK/), [IGVFFI5513BRNR](/sequence-files/IGVFFI5513BRNR/), [IGVFFI4865PLTX](/sequence-files/IGVFFI4865PLTX/), [IGVFFI3179QQMW](/sequence-files/IGVFFI3179QQMW/), [IGVFFI6935NOCA](/sequence-files/IGVFFI6935NOCA/), [IGVFFI0813NKSM](/sequence-files/IGVFFI0813NKSM/), [IGVFFI4935YMBO](/sequence-files/IGVFFI4935YMBO/), [IGVFFI1425QLSN](/sequence-files/IGVFFI1425QLSN/), [IGVFFI6719CXZL](/sequence-files/IGVFFI6719CXZL/), [IGVFFI7991TUCB](/sequence-files/IGVFFI7991TUCB/), [IGVFFI4639LCKN](/sequence-files/IGVFFI4639LCKN/), [IGVFFI1066CTSU](/sequence-files/IGVFFI1066CTSU/), [IGVFFI5074YOVW](/sequence-files/IGVFFI5074YOVW/), [IGVFFI1222AUAS](/sequence-files/IGVFFI1222AUAS/), [IGVFFI0305ZNME](/sequence-files/IGVFFI0305ZNME/), [IGVFFI4319SJHS](/sequence-files/IGVFFI4319SJHS/), [IGVFFI6727XATW](/sequence-files/IGVFFI6727XATW/), [IGVFFI5974XZKD](/sequence-files/IGVFFI5974XZKD/), [IGVFFI5739ZVWW](/sequence-files/IGVFFI5739ZVWW/), [IGVFFI1978HGBT](/sequence-files/IGVFFI1978HGBT/), [IGVFFI6048PIVE](/sequence-files/IGVFFI6048PIVE/), [IGVFFI8973PNPZ](/sequence-files/IGVFFI8973PNPZ/), [IGVFFI2588NWZQ](/sequence-files/IGVFFI2588NWZQ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS9218EUHT/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS9218EUHT](/measurement-sets/IGVFDS9218EUHT/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS9218EUHT/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
"control_file_sets": [
{
"@id": "/measurement-sets/IGVFDS4103BJLT/",
"accession": "IGVFDS4103BJLT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-THP1-PE2_Exp4_NegControl_AmpliconSequencing"
],
"status": "preview"
}
],
"control_for": [],
"creation_timestamp": "2024-11-25T23:53:32.660754+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO7359LVPI/",
"accession": "IGVFDO7359LVPI",
"aliases": [
"igvf:donor_of_THP1"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI7328YPZL/",
"accession": "IGVFFI7328YPZL",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep2_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:12:54.566554+00:00",
"file_format": "fastq",
"file_size": 17832099,
"href": "/sequence-files/IGVFFI7328YPZL/@@download/IGVFFI7328YPZL.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/469cecc4-cbd4-4664-b1d7-4dac2f2eef30/IGVFFI7328YPZL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep2_S632_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0438ZRGH/",
"accession": "IGVFFI0438ZRGH",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep3_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:14:21.200814+00:00",
"file_format": "fastq",
"file_size": 14582054,
"href": "/sequence-files/IGVFFI0438ZRGH/@@download/IGVFFI0438ZRGH.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/a7415d08-edc7-42c7-91b3-533944c1b164/IGVFFI0438ZRGH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep3_S633_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3328DDDR/",
"accession": "IGVFFI3328DDDR",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep8_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:20:07.603281+00:00",
"file_format": "fastq",
"file_size": 16011673,
"href": "/sequence-files/IGVFFI3328DDDR/@@download/IGVFFI3328DDDR.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/e00875a3-e472-44ab-b3a6-49b858991c36/IGVFFI3328DDDR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep8_S638_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1125AQON/",
"accession": "IGVFFI1125AQON",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep4_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:15:30.782687+00:00",
"file_format": "fastq",
"file_size": 17508589,
"href": "/sequence-files/IGVFFI1125AQON/@@download/IGVFFI1125AQON.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/6eedc176-3f9a-4aed-91ef-4455d1cdb781/IGVFFI1125AQON.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep4_S634_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6701BOGO/",
"accession": "IGVFFI6701BOGO",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep7_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:18:57.863820+00:00",
"file_format": "fastq",
"file_size": 14001163,
"href": "/sequence-files/IGVFFI6701BOGO/@@download/IGVFFI6701BOGO.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/ff319d48-3038-4c7f-9869-31c931a0d017/IGVFFI6701BOGO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep7_S637_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8309EPYT/",
"accession": "IGVFFI8309EPYT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep10_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:22:26.799699+00:00",
"file_format": "fastq",
"file_size": 16126489,
"href": "/sequence-files/IGVFFI8309EPYT/@@download/IGVFFI8309EPYT.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/22add9c5-d06e-4175-a0bc-ffd71f22550a/IGVFFI8309EPYT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep10_S640_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4121QQPN/",
"accession": "IGVFFI4121QQPN",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep5_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:16:38.753701+00:00",
"file_format": "fastq",
"file_size": 15897432,
"href": "/sequence-files/IGVFFI4121QQPN/@@download/IGVFFI4121QQPN.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/429f0d62-0a5f-41c4-9aec-b39dd915de41/IGVFFI4121QQPN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep5_S635_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8927YIGQ/",
"accession": "IGVFFI8927YIGQ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep12_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:24:46.656012+00:00",
"file_format": "fastq",
"file_size": 13380068,
"href": "/sequence-files/IGVFFI8927YIGQ/@@download/IGVFFI8927YIGQ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/5aabe116-8117-42d7-8228-1dd6042f1f34/IGVFFI8927YIGQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep12_S642_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3825NAAQ/",
"accession": "IGVFFI3825NAAQ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep11_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:23:36.072685+00:00",
"file_format": "fastq",
"file_size": 15448811,
"href": "/sequence-files/IGVFFI3825NAAQ/@@download/IGVFFI3825NAAQ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/957ac144-967d-4cfd-9ae5-ad170391e991/IGVFFI3825NAAQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep11_S641_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7407RHDK/",
"accession": "IGVFFI7407RHDK",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep1_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:11:29.306955+00:00",
"file_format": "fastq",
"file_size": 20931600,
"href": "/sequence-files/IGVFFI7407RHDK/@@download/IGVFFI7407RHDK.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/680c6ae9-1525-4a66-b06c-57164fb2cb10/IGVFFI7407RHDK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep1_S631_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0063KOHU/",
"accession": "IGVFFI0063KOHU",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep6_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:17:48.004276+00:00",
"file_format": "fastq",
"file_size": 16862365,
"href": "/sequence-files/IGVFFI0063KOHU/@@download/IGVFFI0063KOHU.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/d0957966-92fb-4336-adf2-306e088b54d9/IGVFFI0063KOHU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep6_S636_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1859YNNK/",
"accession": "IGVFFI1859YNNK",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep9_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T07:21:17.595979+00:00",
"file_format": "fastq",
"file_size": 16736663,
"href": "/sequence-files/IGVFFI1859YNNK/@@download/IGVFFI1859YNNK.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/09bfb1ec-5da5-4495-9941-76c99b138945/IGVFFI1859YNNK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep9_S639_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3556JYDE/",
"accession": "IGVFFI3556JYDE",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep7_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T10:07:07.635604+00:00",
"file_format": "fastq",
"file_size": 16354374,
"href": "/sequence-files/IGVFFI3556JYDE/@@download/IGVFFI3556JYDE.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/88f439ce-e026-448c-9c2d-2b2537164264/IGVFFI3556JYDE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep7_S637_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9668HUXL/",
"accession": "IGVFFI9668HUXL",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep11_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T10:16:27.720709+00:00",
"file_format": "fastq",
"file_size": 17981062,
"href": "/sequence-files/IGVFFI9668HUXL/@@download/IGVFFI9668HUXL.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/305e2dd3-5594-49e8-a9b0-d8ca6bf09fe4/IGVFFI9668HUXL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep11_S641_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8711JHMZ/",
"accession": "IGVFFI8711JHMZ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep4_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T10:00:19.572627+00:00",
"file_format": "fastq",
"file_size": 20198918,
"href": "/sequence-files/IGVFFI8711JHMZ/@@download/IGVFFI8711JHMZ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/b2450a25-d363-4c18-aac4-a6390a4d9678/IGVFFI8711JHMZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep4_S634_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2449ODYV/",
"accession": "IGVFFI2449ODYV",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep10_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T10:14:14.545376+00:00",
"file_format": "fastq",
"file_size": 18627649,
"href": "/sequence-files/IGVFFI2449ODYV/@@download/IGVFFI2449ODYV.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/1cced8a8-af36-41b3-8fa8-a770be74ead5/IGVFFI2449ODYV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep10_S640_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3543UJOQ/",
"accession": "IGVFFI3543UJOQ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep1_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:52:16.844093+00:00",
"file_format": "fastq",
"file_size": 24016504,
"href": "/sequence-files/IGVFFI3543UJOQ/@@download/IGVFFI3543UJOQ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/4ae22ccc-b428-498a-9b48-5eaa4eae7344/IGVFFI3543UJOQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep1_S631_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7456ORSB/",
"accession": "IGVFFI7456ORSB",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep3_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:58:01.345979+00:00",
"file_format": "fastq",
"file_size": 17055160,
"href": "/sequence-files/IGVFFI7456ORSB/@@download/IGVFFI7456ORSB.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/7e122ed6-c108-4882-8d0c-a88a205a382c/IGVFFI7456ORSB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep3_S633_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8940FVEX/",
"accession": "IGVFFI8940FVEX",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep5_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T10:02:35.642142+00:00",
"file_format": "fastq",
"file_size": 18413303,
"href": "/sequence-files/IGVFFI8940FVEX/@@download/IGVFFI8940FVEX.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/a4eca840-cc54-4b65-ae62-2263e47d59e6/IGVFFI8940FVEX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep5_S635_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1313PESQ/",
"accession": "IGVFFI1313PESQ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep12_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T10:18:51.131866+00:00",
"file_format": "fastq",
"file_size": 15253919,
"href": "/sequence-files/IGVFFI1313PESQ/@@download/IGVFFI1313PESQ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/b6aadff0-403f-44ce-815c-466edda32853/IGVFFI1313PESQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep12_S642_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2014RTZR/",
"accession": "IGVFFI2014RTZR",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep2_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T09:55:09.834833+00:00",
"file_format": "fastq",
"file_size": 20637369,
"href": "/sequence-files/IGVFFI2014RTZR/@@download/IGVFFI2014RTZR.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/15c06e4d-d27c-4b88-aa1d-4c317a55030a/IGVFFI2014RTZR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep2_S632_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1342IRHD/",
"accession": "IGVFFI1342IRHD",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep9_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T10:11:56.146376+00:00",
"file_format": "fastq",
"file_size": 19368243,
"href": "/sequence-files/IGVFFI1342IRHD/@@download/IGVFFI1342IRHD.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/1b100251-1c82-41c3-8af8-9db87c726fa8/IGVFFI1342IRHD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep9_S639_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8877OZBZ/",
"accession": "IGVFFI8877OZBZ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep6_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T10:04:54.206774+00:00",
"file_format": "fastq",
"file_size": 19429792,
"href": "/sequence-files/IGVFFI8877OZBZ/@@download/IGVFFI8877OZBZ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/139e6355-821a-446f-8ad4-0a82fdbc4c54/IGVFFI8877OZBZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep6_S636_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4317JNQU/",
"accession": "IGVFFI4317JNQU",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep4_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:52:56.342467+00:00",
"file_format": "fastq",
"file_size": 7725876,
"href": "/sequence-files/IGVFFI4317JNQU/@@download/IGVFFI4317JNQU.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/ea4a21be-b814-4afa-a373-5bfee8dea280/IGVFFI4317JNQU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep4_S634_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8097YPEG/",
"accession": "IGVFFI8097YPEG",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep8_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T10:09:31.295066+00:00",
"file_format": "fastq",
"file_size": 18565091,
"href": "/sequence-files/IGVFFI8097YPEG/@@download/IGVFFI8097YPEG.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/3190e1c5-f00b-48f2-a6d9-13cc6b123e7b/IGVFFI8097YPEG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep8_S638_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0216MMNK/",
"accession": "IGVFFI0216MMNK",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep1_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:44:39.712179+00:00",
"file_format": "fastq",
"file_size": 9600448,
"href": "/sequence-files/IGVFFI0216MMNK/@@download/IGVFFI0216MMNK.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/eb2d7516-8fbf-48d7-ab90-3629ca51c760/IGVFFI0216MMNK.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep1_S631_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5513BRNR/",
"accession": "IGVFFI5513BRNR",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep7_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T14:00:22.530655+00:00",
"file_format": "fastq",
"file_size": 6730850,
"href": "/sequence-files/IGVFFI5513BRNR/@@download/IGVFFI5513BRNR.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/3f7f5fb4-115a-440f-935a-2fd16fcda418/IGVFFI5513BRNR.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep7_S637_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4865PLTX/",
"accession": "IGVFFI4865PLTX",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep8_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T14:02:47.167472+00:00",
"file_format": "fastq",
"file_size": 6751847,
"href": "/sequence-files/IGVFFI4865PLTX/@@download/IGVFFI4865PLTX.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/6f057e09-76a9-43e9-97ff-48fab145e418/IGVFFI4865PLTX.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep8_S638_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3179QQMW/",
"accession": "IGVFFI3179QQMW",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep11_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T14:09:39.173633+00:00",
"file_format": "fastq",
"file_size": 7168280,
"href": "/sequence-files/IGVFFI3179QQMW/@@download/IGVFFI3179QQMW.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/0e669e7c-c60c-4ec9-99e1-877485ebc590/IGVFFI3179QQMW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep11_S641_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6935NOCA/",
"accession": "IGVFFI6935NOCA",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep2_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:47:37.411551+00:00",
"file_format": "fastq",
"file_size": 7314761,
"href": "/sequence-files/IGVFFI6935NOCA/@@download/IGVFFI6935NOCA.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/1a1ecf7b-f7da-4f14-ada7-9428ca4bb2e7/IGVFFI6935NOCA.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep2_S632_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0813NKSM/",
"accession": "IGVFFI0813NKSM",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep5_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:55:23.638921+00:00",
"file_format": "fastq",
"file_size": 6680773,
"href": "/sequence-files/IGVFFI0813NKSM/@@download/IGVFFI0813NKSM.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/af447941-d821-4633-9f75-6af503a524f4/IGVFFI0813NKSM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep5_S635_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4935YMBO/",
"accession": "IGVFFI4935YMBO",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep6_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:57:48.234387+00:00",
"file_format": "fastq",
"file_size": 7423739,
"href": "/sequence-files/IGVFFI4935YMBO/@@download/IGVFFI4935YMBO.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/41a31ff3-4913-4f17-b2e7-0960ae3e7b89/IGVFFI4935YMBO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep6_S636_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1425QLSN/",
"accession": "IGVFFI1425QLSN",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep3_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T13:50:33.098232+00:00",
"file_format": "fastq",
"file_size": 6105854,
"href": "/sequence-files/IGVFFI1425QLSN/@@download/IGVFFI1425QLSN.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/a1b20167-b1a6-4d8c-a1c3-8e49a953008e/IGVFFI1425QLSN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep3_S633_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6719CXZL/",
"accession": "IGVFFI6719CXZL",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep10_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T14:07:24.396873+00:00",
"file_format": "fastq",
"file_size": 6527499,
"href": "/sequence-files/IGVFFI6719CXZL/@@download/IGVFFI6719CXZL.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/1595d1fa-d31f-4490-ae23-f24aef2c707f/IGVFFI6719CXZL.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep10_S640_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7991TUCB/",
"accession": "IGVFFI7991TUCB",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep9_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T14:05:06.410595+00:00",
"file_format": "fastq",
"file_size": 7411987,
"href": "/sequence-files/IGVFFI7991TUCB/@@download/IGVFFI7991TUCB.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/f2b57ca3-d924-46c1-b918-68cd23d3eddf/IGVFFI7991TUCB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep9_S639_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4639LCKN/",
"accession": "IGVFFI4639LCKN",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep12_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T14:12:14.712986+00:00",
"file_format": "fastq",
"file_size": 6269756,
"href": "/sequence-files/IGVFFI4639LCKN/@@download/IGVFFI4639LCKN.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/614a1e83-f7e1-4dfa-9910-5b697ae2c169/IGVFFI4639LCKN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep12_S642_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1066CTSU/",
"accession": "IGVFFI1066CTSU",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep10_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T18:05:50.252595+00:00",
"file_format": "fastq",
"file_size": 6474222,
"href": "/sequence-files/IGVFFI1066CTSU/@@download/IGVFFI1066CTSU.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/8d91c7fe-a706-4e62-9ce1-858f3e181822/IGVFFI1066CTSU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep10_S640_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5074YOVW/",
"accession": "IGVFFI5074YOVW",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep9_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T18:03:20.510307+00:00",
"file_format": "fastq",
"file_size": 6747417,
"href": "/sequence-files/IGVFFI5074YOVW/@@download/IGVFFI5074YOVW.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/5ad5357c-7a7e-4cd5-8143-7bc38dab3949/IGVFFI5074YOVW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep9_S639_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1222AUAS/",
"accession": "IGVFFI1222AUAS",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep7_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:58:32.897448+00:00",
"file_format": "fastq",
"file_size": 5798889,
"href": "/sequence-files/IGVFFI1222AUAS/@@download/IGVFFI1222AUAS.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/bbe36a00-61e7-47d5-8db6-126d335ba71c/IGVFFI1222AUAS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep7_S637_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0305ZNME/",
"accession": "IGVFFI0305ZNME",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep2_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:46:04.754774+00:00",
"file_format": "fastq",
"file_size": 7192144,
"href": "/sequence-files/IGVFFI0305ZNME/@@download/IGVFFI0305ZNME.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/f6135d4e-46d9-4c83-8d8b-9be9374300ed/IGVFFI0305ZNME.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep2_S632_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4319SJHS/",
"accession": "IGVFFI4319SJHS",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep3_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:49:04.489905+00:00",
"file_format": "fastq",
"file_size": 6085186,
"href": "/sequence-files/IGVFFI4319SJHS/@@download/IGVFFI4319SJHS.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/23cc5f15-e3d9-48f0-aec9-73d930475c62/IGVFFI4319SJHS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep3_S633_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6727XATW/",
"accession": "IGVFFI6727XATW",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep5_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:53:47.619089+00:00",
"file_format": "fastq",
"file_size": 6555648,
"href": "/sequence-files/IGVFFI6727XATW/@@download/IGVFFI6727XATW.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/dcaf77c4-2578-4145-9e09-292ef9d56c31/IGVFFI6727XATW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep5_S635_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5974XZKD/",
"accession": "IGVFFI5974XZKD",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep4_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:51:29.994350+00:00",
"file_format": "fastq",
"file_size": 7187266,
"href": "/sequence-files/IGVFFI5974XZKD/@@download/IGVFFI5974XZKD.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/e588ecc6-8078-407d-bb0f-b6f50394cacf/IGVFFI5974XZKD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep4_S634_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5739ZVWW/",
"accession": "IGVFFI5739ZVWW",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep8_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T18:01:00.234616+00:00",
"file_format": "fastq",
"file_size": 6542484,
"href": "/sequence-files/IGVFFI5739ZVWW/@@download/IGVFFI5739ZVWW.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/a1bedd90-de51-4ec2-b700-fad790ce0099/IGVFFI5739ZVWW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep8_S638_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1978HGBT/",
"accession": "IGVFFI1978HGBT",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep11_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T18:08:16.981982+00:00",
"file_format": "fastq",
"file_size": 6642714,
"href": "/sequence-files/IGVFFI1978HGBT/@@download/IGVFFI1978HGBT.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/e2125b59-3693-4143-a6c4-dc7409f70754/IGVFFI1978HGBT.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep11_S641_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6048PIVE/",
"accession": "IGVFFI6048PIVE",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep12_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T18:10:43.254258+00:00",
"file_format": "fastq",
"file_size": 5422744,
"href": "/sequence-files/IGVFFI6048PIVE/@@download/IGVFFI6048PIVE.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/dccf89b3-d7fe-40ff-a004-0bca1f6a35c4/IGVFFI6048PIVE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep12_S642_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8973PNPZ/",
"accession": "IGVFFI8973PNPZ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep1_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:43:05.416285+00:00",
"file_format": "fastq",
"file_size": 8372254,
"href": "/sequence-files/IGVFFI8973PNPZ/@@download/IGVFFI8973PNPZ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/10d3466b-e299-4c70-a6ee-141252ea173a/IGVFFI8973PNPZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep1_S631_I2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI2588NWZQ/",
"accession": "IGVFFI2588NWZQ",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep6_I2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-26T17:56:12.949489+00:00",
"file_format": "fastq",
"file_size": 6824914,
"href": "/sequence-files/IGVFFI2588NWZQ/@@download/IGVFFI2588NWZQ.fastq.gz",
"s3_uri": "s3://igvf-files/2024/11/26/7eba60c3-d882-4e8f-a029-2db01b0cffd3/IGVFFI2588NWZQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "240426S024-Enhancer-THP1-PPIF_Enhancer_val_guides-Amp_PPIF_enhancer-BioRep2-FFrep1-BinC-PCRrep6_S636_I2_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS4833ZRTZ/"
],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"notes": "This measurement set previously used Variant FlowFISH as a preferred_assay_title, but this enum is now removed. So it has been defaulted to Variant-EFFECTS.",
"preferred_assay_title": "Variant-EFFECTS",
"protocols": [
"https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1"
],
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM4994IFXA/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4994IFXA",
"aliases": [
"jesse-engreitz:240426S024-PPIFenhancervalidation-THP1_Amp_PPIF_enhancer-BioRep2-FFrep1-BinC"
],
"classifications": [
"cell line"
],
"construct_library_sets": [
{
"@id": "/construct-library-sets/IGVFDS4955GEYO/",
"accession": "IGVFDS4955GEYO",
"file_set_type": "guide library",
"status": "preview",
"summary": "guide (sgRNA) library targeting sequence variants in a genomic locus"
}
],
"modifications": [
{
"@id": "/crispr-modifications/fc6bc0b3-a064-47d0-b95d-a9af14bb1624/",
"modality": "prime editing",
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001253/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"aliases": [
"igvf:THP-1"
],
"status": "released",
"summary": "THP-1",
"term_name": "THP-1"
}
],
"status": "preview",
"summary": "THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 51-75% expression of PPIF) modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "preview",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_files_timestamp": "2024-11-26T07:11:29.306955+00:00",
"summary": "CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus",
"targeted_genes": [
{
"@id": "/genes/ENSG00000108179/",
"geneid": "ENSG00000108179",
"name": "peptidylprolyl isomerase F",
"status": "released",
"symbol": "PPIF",
"synonyms": [
"rotamase F",
"CYP3",
"cyclophilin F",
"mitochondrial cyclophilin",
"peptidyl-prolyl cis-trans isomerase, mitochondrial",
"CypD",
"Cyp-D",
"cyclophilin 3",
"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "50759b3a-071c-4207-874a-f2800dfc3870"
}